Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LTQ03_RS08360 Genome accession   NZ_CP089201
Coordinates   1858469..1859101 (-) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio splendidus strain 1_C04a     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1853469..1864101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS08345 (LTQ03_08345) astA 1854680..1855699 (+) 1020 WP_004729654.1 arginine N-succinyltransferase -
  LTQ03_RS08350 (LTQ03_08350) astD 1855739..1857196 (+) 1458 WP_243583174.1 succinylglutamate-semialdehyde dehydrogenase -
  LTQ03_RS08355 (LTQ03_08355) - 1857494..1858285 (+) 792 WP_065682845.1 DUF1338 domain-containing protein -
  LTQ03_RS08360 (LTQ03_08360) crp 1858469..1859101 (-) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  LTQ03_RS08365 (LTQ03_08365) - 1859341..1860210 (-) 870 WP_004729650.1 phosphoribulokinase -
  LTQ03_RS08370 (LTQ03_08370) - 1860288..1860500 (-) 213 WP_004729649.1 YheU family protein -
  LTQ03_RS08375 (LTQ03_08375) - 1860600..1861592 (-) 993 WP_243583176.1 hydrolase -
  LTQ03_RS08380 (LTQ03_08380) - 1861869..1862339 (-) 471 WP_243583177.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=635659 LTQ03_RS08360 WP_004729651.1 1858469..1859101(-) (crp) [Vibrio splendidus strain 1_C04a]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=635659 LTQ03_RS08360 WP_004729651.1 1858469..1859101(-) (crp) [Vibrio splendidus strain 1_C04a]
ATGGTTCTAGGTAAACCCCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTCATTGGTGAACTTGGCCTCTTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTAATGCGCCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTTAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467