Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   N7985_RS15020 Genome accession   NZ_CP106673
Coordinates   2899577..2900581 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis strain SRCM116268     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2894577..2905581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7985_RS14995 (N7985_14995) acuA 2895504..2896136 (+) 633 WP_014480567.1 acetoin utilization protein acetyltransferase AcuA -
  N7985_RS15000 (N7985_15000) acuB 2896163..2896807 (+) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  N7985_RS15005 (N7985_15005) acuC 2896804..2897967 (+) 1164 WP_015714526.1 acetoin utilization protein AcuC -
  N7985_RS15010 (N7985_15010) motS 2897978..2898706 (-) 729 WP_015714527.1 flagellar motor protein MotS -
  N7985_RS15015 (N7985_15015) motP 2898696..2899514 (-) 819 WP_015714528.1 flagellar motor protein MotP -
  N7985_RS15020 (N7985_15020) ccpA 2899577..2900581 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  N7985_RS15025 (N7985_15025) aroX 2900857..2901933 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  N7985_RS15030 (N7985_15030) ytxJ 2902169..2902495 (-) 327 WP_015714529.1 bacillithiol system redox-active protein YtxJ -
  N7985_RS15035 (N7985_15035) ytxH 2902519..2902974 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  N7985_RS15040 (N7985_15040) ytxG 2903005..2903427 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  N7985_RS15045 (N7985_15045) murC 2903589..2904887 (-) 1299 WP_015714530.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=635541 N7985_RS15020 WP_003229285.1 2899577..2900581(-) (ccpA) [Bacillus subtilis strain SRCM116268]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=635541 N7985_RS15020 WP_003229285.1 2899577..2900581(-) (ccpA) [Bacillus subtilis strain SRCM116268]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCA
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCCCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCTGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCATTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCAAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGCTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCGCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATTGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTAAGAAAGTCAACCAAGTCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539
  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503