Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGA   Type   Machinery gene
Locus tag   LTK17_RS12760 Genome accession   NZ_CP089157
Coordinates   2636337..2637311 (-) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   W8U5L8
Organism   Staphylococcus aureus strain UNC_SaCF30     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2631337..2642311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTK17_RS12720 (LTK17_12720) gcvT 2631838..2632929 (-) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  LTK17_RS12725 (LTK17_12725) - 2633088..2633612 (-) 525 WP_001015125.1 shikimate kinase -
  LTK17_RS12730 (LTK17_12730) - 2633602..2633748 (-) 147 WP_001789879.1 hypothetical protein -
  LTK17_RS12735 (LTK17_12735) comGF 2633845..2634342 (-) 498 WP_001794055.1 competence type IV pilus minor pilin ComGF Machinery gene
  LTK17_RS12740 (LTK17_12740) comGE 2634260..2634559 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  LTK17_RS12745 (LTK17_12745) comGD 2634546..2634992 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  LTK17_RS12750 (LTK17_12750) comGC 2634970..2635281 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  LTK17_RS12755 (LTK17_12755) comGB 2635295..2636365 (-) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  LTK17_RS12760 (LTK17_12760) comGA 2636337..2637311 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  LTK17_RS12765 (LTK17_12765) - 2637363..2637986 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LTK17_RS12770 (LTK17_12770) - 2637983..2638312 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LTK17_RS12775 (LTK17_12775) - 2638312..2639298 (-) 987 WP_000161314.1 ROK family glucokinase -
  LTK17_RS12780 (LTK17_12780) - 2639295..2639498 (-) 204 WP_000087561.1 YqgQ family protein -
  LTK17_RS12785 (LTK17_12785) - 2639479..2640942 (-) 1464 WP_209055750.1 rhomboid family intramembrane serine protease -
  LTK17_RS12790 (LTK17_12790) - 2640954..2641493 (-) 540 WP_000164553.1 5-formyltetrahydrofolate cyclo-ligase -
  LTK17_RS12795 (LTK17_12795) rpmG 2641702..2641851 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence


Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=635460 LTK17_RS12760 WP_000697220.1 2636337..2637311(-) (comGA) [Staphylococcus aureus strain UNC_SaCF30]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=635460 LTK17_RS12760 WP_000697220.1 2636337..2637311(-) (comGA) [Staphylococcus aureus strain UNC_SaCF30]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTGCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB W8U5L8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1

  comGA Staphylococcus aureus N315

100

100

1