Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   LRO88_RS21040 Genome accession   NZ_CP089148
Coordinates   3872185..3872304 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain NIB353     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3867185..3877304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS21020 albG 3867349..3868050 (+) 702 WP_014481222.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  LRO88_RS21025 ywhL 3868056..3869432 (-) 1377 WP_014481223.1 YncE family protein -
  LRO88_RS21030 ywhK 3869471..3870826 (-) 1356 WP_049140945.1 YncE family protein -
  LRO88_RS24225 - 3870823..3871053 (-) 231 Protein_4101 hypothetical protein -
  LRO88_RS21035 rapF 3871056..3872201 (+) 1146 WP_021480843.1 response regulator aspartate phosphatase RapF Regulator
  LRO88_RS21040 phrF 3872185..3872304 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  LRO88_RS21045 ywhH 3872402..3872875 (+) 474 Protein_4104 YbaK/EbsC family protein -
  LRO88_RS21050 speB 3872906..3873778 (-) 873 WP_003227545.1 agmatinase -
  LRO88_RS21055 speE 3873839..3874669 (-) 831 WP_003227543.1 spermidine synthase -
  LRO88_RS21060 pbpG 3874871..3876946 (+) 2076 WP_015384942.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=635339 LRO88_RS21040 WP_009968329.1 3872185..3872304(+) (phrF) [Bacillus subtilis strain NIB353]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=635339 LRO88_RS21040 WP_009968329.1 3872185..3872304(+) (phrF) [Bacillus subtilis strain NIB353]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487