Detailed information NTG0635338

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: LRO88_RS21035
• Genome accession: NZ_CP089148
• Coordinates: 3871056..3872201 (+)
• Length: 381 a.a.
• NCBI ID: WP_021480843.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain NIB353
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3866056..3877201

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRO88_RS21015	albF	3866072..3867352 (+)	1281	WP_069964371.1	M16 family metallopeptidase	-
LRO88_RS21020	albG	3867349..3868050 (+)	702	WP_014481222.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
LRO88_RS21025	ywhL	3868056..3869432 (-)	1377	WP_014481223.1	YncE family protein	-
LRO88_RS21030	ywhK	3869471..3870826 (-)	1356	WP_049140945.1	YncE family protein	-
LRO88_RS24225	-	3870823..3871053 (-)	231	Protein_4101	hypothetical protein	-
LRO88_RS21035	rapF	3871056..3872201 (+)	1146	WP_021480843.1	response regulator aspartate phosphatase RapF	Regulator
LRO88_RS21040	phrF	3872185..3872304 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
LRO88_RS21045	ywhH	3872402..3872875 (+)	474	Protein_4104	YbaK/EbsC family protein	-
LRO88_RS21050	speB	3872906..3873778 (-)	873	WP_003227545.1	agmatinase	-
LRO88_RS21055	speE	3873839..3874669 (-)	831	WP_003227543.1	spermidine synthase	-
LRO88_RS21060	pbpG	3874871..3876946 (+)	2076	WP_015384942.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45603.10 Da
• Isoelectric Point: 5.1493

>NTDB_id=635338 LRO88_RS21035 WP_021480843.1 3871056..3872201(+) (rapF) [Bacillus subtilis strain NIB353]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFNFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=635338 LRO88_RS21035 WP_021480843.1 3871056..3872201(+) (rapF) [Bacillus subtilis strain NIB353]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTATGAGCTGGACCAACGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTAATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

• Tetratricopeptide repeat (TPR_12) (223-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	99.213	100	0.992
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572