Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   B591_RS22570 Genome accession   NZ_CP106650
Coordinates   5112465..5113538 (-) Length   357 a.a.
NCBI ID   WP_023419578.1    Uniprot ID   -
Organism   Streptomyces sp. GBA 94-10 4N24 strain GBA 94-10     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5107465..5118538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B591_RS22555 (B591_22361) rcrP 5108490..5110223 (+) 1734 WP_023419575.1 ABC transporter ATP-binding protein Regulator
  B591_RS22560 (B591_22366) rcrQ 5110223..5112139 (+) 1917 WP_023419576.1 ABC transporter ATP-binding protein Regulator
  B591_RS22565 (B591_22371) - 5112233..5112448 (+) 216 WP_037787425.1 hypothetical protein -
  B591_RS22570 (B591_22376) rpoS 5112465..5113538 (-) 1074 WP_023419578.1 RNA polymerase sigma factor Regulator
  B591_RS22575 (B591_22381) dnaG 5113737..5115641 (-) 1905 WP_023419579.1 DNA primase -
  B591_RS22580 (B591_22386) - 5115762..5117024 (-) 1263 WP_023422842.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38798.43 Da        Isoelectric Point: 10.2066

>NTDB_id=635257 B591_RS22570 WP_023419578.1 5112465..5113538(-) (rpoS) [Streptomyces sp. GBA 94-10 4N24 strain GBA 94-10]
MQTRPPRPAPAAPPSALAPDVPTPRRSPQRAPAGGAGTGPQGAGGRAPAGPDQAGAAAPDLFRQYLREIGRIPLLSAADE
VELARRVEAGVFAAAKLAAGCADAGLARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNLGLIRA
VEKFDYTRGFKFSTYATWWIRQAMSRALADQARIIRVPVHVVELINRVVRTQRALLQEAGREPAAEEVGERLGLSAEKVE
EVLRLAREPISLHAPVGGEDDVFLGDLIEDADAASPAESAALLLLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEE
IGRLFGVTRERVRQIESKTLRRLREHTAAGQLRGYLE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=635257 B591_RS22570 WP_023419578.1 5112465..5113538(-) (rpoS) [Streptomyces sp. GBA 94-10 4N24 strain GBA 94-10]
GTGCAGACCAGGCCCCCTCGCCCCGCGCCCGCCGCCCCGCCCTCGGCCCTCGCCCCGGACGTCCCCACTCCGCGCAGGTC
GCCCCAGCGGGCCCCGGCCGGCGGAGCCGGGACCGGGCCGCAGGGCGCGGGCGGGCGGGCACCGGCAGGACCCGACCAGG
CGGGGGCGGCCGCCCCCGACCTCTTCCGGCAGTACCTCCGGGAGATCGGGCGCATCCCGCTGCTCTCGGCCGCCGACGAG
GTGGAGCTGGCCCGGCGCGTGGAGGCCGGTGTGTTCGCCGCGGCGAAGCTCGCCGCGGGCTGCGCGGACGCGGGGCTCGC
CCGGGACCTGCGGCGGCTGGTGGTGCTCGGGGAACGGGCCAAGGGGCGGCTCATCGAGGCCAATCTGCGGCTCGTCGTCT
CGGTCGCCAAGCGGTACACGGGACGCGGCCTGACCATGCTCGACCTGGTGCAGGAGGGCAACCTCGGGCTGATCCGCGCG
GTGGAGAAGTTCGACTACACCCGGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATACGCCAGGCGATGTCCCGCGC
CCTCGCCGACCAGGCCCGCATCATCCGGGTGCCGGTGCACGTGGTGGAGCTGATCAACCGGGTCGTGCGCACCCAGCGCG
CCCTGCTCCAGGAGGCGGGGCGTGAGCCGGCCGCCGAGGAGGTCGGCGAGCGGCTCGGGCTGAGCGCCGAGAAGGTCGAG
GAGGTGCTGCGGCTGGCCCGCGAACCCATCTCCCTGCACGCGCCGGTAGGCGGTGAGGACGACGTCTTCCTCGGCGACCT
CATCGAGGACGCCGACGCGGCCTCCCCCGCCGAGAGCGCCGCCCTGCTCCTGCTCCGCCAGCACCTCGACGCGGTGCTCG
CCACCCTCGGCGACCGCGAACGCCAGGTGGTGCAGTTGCGGTACGGGTTCGACGACGGGCGGCCGCGCACCCTGGAGGAG
ATCGGCCGGCTCTTCGGGGTCACCCGCGAACGAGTCCGCCAGATCGAGTCGAAGACACTGCGCCGGCTCCGTGAGCACAC
GGCGGCGGGGCAGTTGCGCGGCTACCTGGAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(203-279)

Sigma-70 region 2 (Sigma70_r2)

(124-193)

Sigma-70, region 4 (Sigma70_r4)

(292-345)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(60-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.521

81.793

0.364