Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B591_RS22560 Genome accession   NZ_CP106650
Coordinates   5110223..5112139 (+) Length   638 a.a.
NCBI ID   WP_023419576.1    Uniprot ID   -
Organism   Streptomyces sp. GBA 94-10 4N24 strain GBA 94-10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5105223..5117139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B591_RS22525 (B591_22346) - 5105392..5105829 (+) 438 Protein_4433 site-specific integrase -
  B591_RS22545 (B591_22351) - 5106514..5106813 (+) 300 WP_023419573.1 hypothetical protein -
  B591_RS22550 (B591_22356) - 5106904..5108358 (+) 1455 WP_023419574.1 FGGY-family carbohydrate kinase -
  B591_RS22555 (B591_22361) rcrP 5108490..5110223 (+) 1734 WP_023419575.1 ABC transporter ATP-binding protein Regulator
  B591_RS22560 (B591_22366) rcrQ 5110223..5112139 (+) 1917 WP_023419576.1 ABC transporter ATP-binding protein Regulator
  B591_RS22565 (B591_22371) - 5112233..5112448 (+) 216 WP_037787425.1 hypothetical protein -
  B591_RS22570 (B591_22376) rpoS 5112465..5113538 (-) 1074 WP_023419578.1 RNA polymerase sigma factor Regulator
  B591_RS22575 (B591_22381) dnaG 5113737..5115641 (-) 1905 WP_023419579.1 DNA primase -
  B591_RS22580 (B591_22386) - 5115762..5117024 (-) 1263 WP_023422842.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 638 a.a.        Molecular weight: 68750.74 Da        Isoelectric Point: 4.8561

>NTDB_id=635256 B591_RS22560 WP_023419576.1 5110223..5112139(+) (rcrQ) [Streptomyces sp. GBA 94-10 4N24 strain GBA 94-10]
MAGPMGAGAPGQQSMDFKGSGRRLLAQFRPEKNVLWAMLATGLVSVALSVTGPKILGWATDLVFAGIVGRDMPAGATREQ
VLAGMREGGDDGVADMLSGMDFTPGQGIDFGAVGEVLLLALGVFLLASALMAVSARLSNRAINRTVFRMRRDVQTKLSRL
PLSYFDQRQRGEVLSRATNDIDNIGQTLQQTMGQVVNSLLTVIGVLVMMFWISPLLALVALVTVPLSFVVATRVGKRSQP
HFVSQWSSTGTLNAHIEEMYTGHSLVKVFGRQEESAERFAEENDALCQASFKAQFTSGIMQPLMMFVSNFNYVLVAVVGG
LRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDADEQEPDPVPGARLEKPRGRVALEQVSF
RYEPDRPLIEDLSLTVEPGRTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVEIAAMAREDLRSRIGMVLQDTWLFG
GTIAENIAYGASREVSREEVEEAARAAHADRFVRTLPDGYDTVLDDEGSGVSAGEKQLVTIARAFLSDPVILVLDEATSS
VDTRTEVLIQQAMARLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGSHTGLLAAEGAYARLYAAQFAEAVVEVD

Nucleotide


Download         Length: 1917 bp        

>NTDB_id=635256 B591_RS22560 WP_023419576.1 5110223..5112139(+) (rcrQ) [Streptomyces sp. GBA 94-10 4N24 strain GBA 94-10]
ATGGCGGGCCCGATGGGCGCCGGAGCGCCGGGACAGCAGTCGATGGACTTCAAGGGCTCGGGCAGGCGGCTGCTGGCCCA
GTTCCGCCCCGAGAAGAACGTGCTGTGGGCGATGCTCGCCACCGGCCTGGTCAGCGTGGCGCTCTCGGTGACCGGCCCGA
AGATCCTCGGCTGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGCCGCGACATGCCGGCCGGCGCCACCCGTGAGCAG
GTGCTGGCGGGGATGCGCGAGGGCGGCGACGACGGCGTGGCCGACATGCTCTCCGGGATGGACTTCACCCCCGGCCAGGG
CATCGACTTCGGCGCCGTCGGCGAGGTGCTGCTGCTCGCGCTCGGCGTCTTCCTGCTGGCAAGCGCCCTGATGGCGGTCT
CGGCCCGGCTCTCGAACCGCGCGATCAACCGCACCGTCTTCCGGATGCGCCGCGACGTGCAGACCAAGCTGTCGCGGCTG
CCGCTCTCCTACTTCGACCAGCGCCAGCGCGGCGAGGTGCTCAGCCGCGCCACCAACGACATCGACAACATCGGCCAGAC
GCTTCAGCAGACGATGGGCCAAGTGGTCAACTCGCTGCTGACCGTCATCGGTGTGCTGGTGATGATGTTCTGGATATCGC
CGCTGCTCGCCCTGGTGGCGCTGGTGACGGTGCCGCTCTCCTTCGTGGTCGCCACCCGGGTCGGCAAGCGTTCCCAGCCG
CACTTCGTCAGCCAGTGGTCCTCGACGGGCACGCTCAACGCCCACATCGAGGAGATGTACACCGGCCACAGCCTGGTCAA
GGTCTTCGGCCGCCAGGAGGAGTCGGCCGAGCGGTTCGCCGAGGAGAACGACGCGCTCTGCCAGGCGTCTTTCAAGGCCC
AGTTCACCAGCGGCATCATGCAGCCGCTGATGATGTTCGTCTCCAACTTCAACTACGTGCTGGTCGCCGTCGTCGGTGGC
CTCCGGGTCGCCTCGGGCGCCCTGTCCATCGGTGACGTGCAGGCGTTCATCCAGTACTCCCGGCAGTTCTCGATGCCGCT
GACCCAGGTCGCCTCGATGGCCAACCTGGTGCAGTCCGGCGTCGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACGCCG
ACGAGCAGGAGCCCGACCCGGTCCCCGGCGCCCGCCTGGAGAAGCCGCGCGGCCGCGTCGCCCTGGAGCAGGTCTCCTTC
CGCTACGAGCCGGACCGGCCCCTGATCGAGGACCTCTCCCTGACCGTCGAGCCGGGCCGCACGGTCGCCATCGTCGGCCC
GACCGGCGCCGGCAAGACCACCCTGGTCAATCTGCTGATGCGGTTCTACGAGGTCACCGGCGGCCGGATCACCCTGGACG
GCGTCGAGATCGCCGCCATGGCCCGGGAGGACCTGCGTTCCCGGATCGGCATGGTCCTCCAGGACACCTGGCTGTTCGGC
GGCACCATCGCGGAGAACATCGCCTACGGCGCCTCCCGCGAGGTGAGCCGTGAGGAGGTCGAGGAGGCGGCCCGCGCCGC
CCACGCCGACCGCTTCGTCCGCACGCTCCCCGACGGCTACGACACCGTCCTCGACGACGAGGGCAGCGGTGTCAGCGCCG
GCGAGAAGCAGCTCGTCACCATCGCGCGGGCCTTCCTCTCCGACCCGGTGATCCTCGTCCTGGACGAGGCCACCAGCTCG
GTGGACACCCGTACCGAGGTGCTGATCCAGCAGGCCATGGCCCGCCTCGCGCACGGCCGGACCTCGTTCGTCATCGCCCA
CCGCCTCTCCACGATCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGGGCCATCGTCGAGCAGGGCTCGCACACCG
GACTGCTCGCCGCCGAGGGGGCGTACGCCCGCCTGTACGCGGCCCAGTTCGCCGAGGCGGTCGTCGAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(410-559)

ABC transporter transmembrane region (ABC_membrane)

(111-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.973

85.737

0.386