Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   CSB63_RS08975 Genome accession   NZ_CP089060
Coordinates   1693005..1693433 (-) Length   142 a.a.
NCBI ID   WP_011226626.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1688005..1698433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS08935 (CSB63_1880) - 1688143..1688586 (-) 444 WP_041829335.1 hypothetical protein -
  CSB63_RS08940 (CSB63_1881) - 1688660..1689079 (-) 420 WP_014727721.1 CPBP family intramembrane glutamic endopeptidase -
  CSB63_RS08945 (CSB63_1883) - 1689328..1689525 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  CSB63_RS08950 (CSB63_1884) - 1689774..1690967 (-) 1194 WP_014608740.1 acetate kinase -
  CSB63_RS08955 (CSB63_1885) comYH 1691023..1691979 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  CSB63_RS08960 (CSB63_1886) comGG 1692024..1692341 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  CSB63_RS08965 (CSB63_1887) comYF 1692319..1692756 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  CSB63_RS08970 comGE 1692740..1693033 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  CSB63_RS08975 (CSB63_1889) comYD 1693005..1693433 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  CSB63_RS08980 (CSB63_1890) comYC 1693393..1693719 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  CSB63_RS08985 (CSB63_1891) comYB 1693716..1694816 (-) 1101 WP_134973504.1 competence type IV pilus assembly protein ComGB Machinery gene
  CSB63_RS08990 (CSB63_1892) - 1694698..1695390 (-) 693 Protein_1709 ATPase, T2SS/T4P/T4SS family -
  CSB63_RS08995 (CSB63_1893) - 1695448..1696800 (-) 1353 WP_134973005.1 IS66-like element short variant transposase -
  CSB63_RS09000 (CSB63_1894) - 1696754..1696960 (-) 207 WP_134973004.1 transposase -
  CSB63_RS09005 (CSB63_1895) tnpB 1697011..1697361 (-) 351 WP_014295152.1 IS66 family insertion sequence element accessory protein TnpB -
  CSB63_RS09010 (CSB63_1896) - 1697342..1697527 (-) 186 WP_134973003.1 hypothetical protein -
  CSB63_RS09015 (CSB63_1897) - 1697609..1697875 (-) 267 Protein_1714 hypothetical protein -
  CSB63_RS09020 (CSB63_1898) - 1697956..1698318 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15859.45 Da        Isoelectric Point: 10.3330

>NTDB_id=634894 CSB63_RS08975 WP_011226626.1 1693005..1693433(-) (comYD) [Streptococcus thermophilus strain CH8]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=634894 CSB63_RS08975 WP_011226626.1 1693005..1693433(-) (comYD) [Streptococcus thermophilus strain CH8]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus mutans UA140

52.672

92.254

0.486
  comYD Streptococcus mutans UA159

52.672

92.254

0.486
  comYD Streptococcus gordonii str. Challis substr. CH1

41.429

98.592

0.408
  comGD/cglD Streptococcus pneumoniae Rx1

44.094

89.437

0.394
  comGD/cglD Streptococcus pneumoniae D39

44.094

89.437

0.394
  comGD/cglD Streptococcus pneumoniae R6

44.094

89.437

0.394
  comGD/cglD Streptococcus mitis NCTC 12261

44.094

89.437

0.394
  comGD/cglD Streptococcus pneumoniae TIGR4

44.094

89.437

0.394
  comGD/cglD Streptococcus mitis SK321

43.307

89.437

0.387
  comGD Lactococcus lactis subsp. cremoris KW2

40.909

92.958

0.38