Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   CSB63_RS08955 Genome accession   NZ_CP089060
Coordinates   1691023..1691979 (-) Length   318 a.a.
NCBI ID   WP_011681684.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1686023..1696979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS08925 (CSB63_1878) proC 1686584..1687354 (+) 771 WP_014727718.1 pyrroline-5-carboxylate reductase -
  CSB63_RS08930 (CSB63_1879) - 1687384..1688046 (-) 663 WP_014727719.1 CPBP family intramembrane glutamic endopeptidase -
  CSB63_RS08935 (CSB63_1880) - 1688143..1688586 (-) 444 WP_041829335.1 hypothetical protein -
  CSB63_RS08940 (CSB63_1881) - 1688660..1689079 (-) 420 WP_014727721.1 CPBP family intramembrane glutamic endopeptidase -
  CSB63_RS08945 (CSB63_1883) - 1689328..1689525 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  CSB63_RS08950 (CSB63_1884) - 1689774..1690967 (-) 1194 WP_014608740.1 acetate kinase -
  CSB63_RS08955 (CSB63_1885) comYH 1691023..1691979 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  CSB63_RS08960 (CSB63_1886) comGG 1692024..1692341 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  CSB63_RS08965 (CSB63_1887) comYF 1692319..1692756 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  CSB63_RS08970 comGE 1692740..1693033 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  CSB63_RS08975 (CSB63_1889) comYD 1693005..1693433 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  CSB63_RS08980 (CSB63_1890) comYC 1693393..1693719 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  CSB63_RS08985 (CSB63_1891) comYB 1693716..1694816 (-) 1101 WP_134973504.1 competence type IV pilus assembly protein ComGB Machinery gene
  CSB63_RS08990 (CSB63_1892) - 1694698..1695390 (-) 693 Protein_1709 ATPase, T2SS/T4P/T4SS family -
  CSB63_RS08995 (CSB63_1893) - 1695448..1696800 (-) 1353 WP_134973005.1 IS66-like element short variant transposase -
  CSB63_RS09000 (CSB63_1894) - 1696754..1696960 (-) 207 WP_134973004.1 transposase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35843.02 Da        Isoelectric Point: 4.7891

>NTDB_id=634892 CSB63_RS08955 WP_011681684.1 1691023..1691979(-) (comYH) [Streptococcus thermophilus strain CH8]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=634892 CSB63_RS08955 WP_011681684.1 1691023..1691979(-) (comYH) [Streptococcus thermophilus strain CH8]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682