Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CSB63_RS07505 Genome accession   NZ_CP089060
Coordinates   1412847..1413542 (-) Length   231 a.a.
NCBI ID   WP_134973401.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1407847..1418542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS07490 (CSB63_1575) - 1408658..1409203 (-) 546 WP_022096992.1 GNAT family N-acetyltransferase -
  CSB63_RS07495 (CSB63_1576) - 1409269..1410531 (-) 1263 WP_022096991.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CSB63_RS07500 (CSB63_1577) - 1410617..1412857 (-) 2241 WP_134973399.1 DNA internalization-related competence protein ComEC/Rec2 -
  CSB63_RS07505 (CSB63_1578) comEA 1412847..1413542 (-) 696 WP_134973401.1 helix-hairpin-helix domain-containing protein Machinery gene
  CSB63_RS07510 (CSB63_1579) - 1413649..1414404 (-) 756 WP_134973402.1 lysophospholipid acyltransferase family protein -
  CSB63_RS09960 - 1414496..1415467 (+) 972 Protein_1425 polysaccharide deacetylase family protein -
  CSB63_RS07525 (CSB63_1582) - 1415517..1416281 (+) 765 WP_065972495.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CSB63_RS07530 (CSB63_1583) - 1416285..1416554 (+) 270 WP_134973406.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24495.41 Da        Isoelectric Point: 4.6288

>NTDB_id=634882 CSB63_RS07505 WP_134973401.1 1412847..1413542(-) (comEA) [Streptococcus thermophilus strain CH8]
MKEKILAYVKDNHLFVSVIAVLMVIFCFFLWMTCGAGNSMEAETSYTDVTALSTSSSKQSSQSLSEASSQSKTEGSEKVK
SKVTVDVKGAVVNPGVYTLKAGARVTDVIQEAGGMTEDADAKSVNLAASLSDEEVIYVANKDENVSVLDQTGTGQVSDKG
GQAVSKDGKINLNTATSEQLQTISGIGAKRTEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESLYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=634882 CSB63_RS07505 WP_134973401.1 1412847..1413542(-) (comEA) [Streptococcus thermophilus strain CH8]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATCATCTGTTTGTGAGTGTCATCGCTGTACTGATGGTGATTTTTTG
CTTCTTTTTATGGATGACTTGTGGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAGCTTTGTCAA
CGTCTTCATCCAAACAAAGTTCACAGTCTCTTTCTGAGGCGTCTTCCCAGTCAAAGACCGAAGGAAGTGAAAAAGTTAAG
TCAAAAGTAACGGTAGATGTTAAGGGGGCTGTGGTCAATCCAGGTGTCTATACGCTAAAGGCAGGCGCTAGGGTGACAGA
TGTCATTCAGGAAGCTGGAGGAATGACAGAAGATGCAGACGCTAAGAGTGTTAACTTAGCCGCAAGCTTGTCAGATGAAG
AGGTTATTTATGTAGCCAATAAAGATGAAAATGTTTCTGTCCTTGATCAAACAGGTACTGGTCAGGTCTCTGACAAAGGA
GGGCAAGCTGTATCTAAGGATGGCAAAATTAACTTAAATACAGCGACCTCAGAGCAGTTGCAAACCATTTCTGGAATTGG
AGCTAAGCGGACAGAGGATATCATTGCCTATCGTGAAAGTCATGGCGGCTTTCAGTCCGTAGATGACTTGAAAAATGTCT
CAGGAATTGGTGATAAAACATTAGATAAAATCAGAGAGTCCCTCTATGTGGCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(167-228)

SLBB domain (SLBB)

(85-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

98.701

100

0.987
  comEA/celA/cilE Streptococcus mitis SK321

40.611

99.134

0.403
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

39.035

98.701

0.385