Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LSO60_RS10440 Genome accession   NZ_CP089051
Coordinates   2160896..2161429 (-) Length   177 a.a.
NCBI ID   WP_004988651.1    Uniprot ID   A0AA46P7Y1
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2155896..2166429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS10420 (LSO60_10400) lipA 2156355..2157368 (+) 1014 WP_263512145.1 lipoyl synthase -
  LSO60_RS10425 (LSO60_10405) - 2157619..2159622 (+) 2004 WP_263512146.1 transglutaminaseTgpA domain-containing protein -
  LSO60_RS10435 (LSO60_10415) pilE 2160447..2160902 (-) 456 WP_004988647.1 type IV pilin protein Machinery gene
  LSO60_RS10440 (LSO60_10420) comE 2160896..2161429 (-) 534 WP_004988651.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LSO60_RS10445 (LSO60_10425) - 2161434..2165384 (-) 3951 WP_263512147.1 hypothetical protein -
  LSO60_RS10450 (LSO60_10430) - 2165401..2166088 (-) 688 Protein_2032 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19542.16 Da        Isoelectric Point: 9.2551

>NTDB_id=634817 LSO60_RS10440 WP_004988651.1 2160896..2161429(-) (comE) [Acinetobacter ursingii strain RIVM_C010559]
MKKETGKIRSHHGYGFTLIELMVTVAIVAIFAAIAFPSYQAYTRKAYAAQTQQEIEKLAEQLERHKARNFNYKGFDASFL
YKDASGVLISNFNNNKQELSLPVDGSSTKYILSIVDQTEGNPLLINSTSLGQGWAIKALSTDDKNDSFLKTSNGIQCKNK
TKANITFSGCGVGSEIW

Nucleotide


Download         Length: 534 bp        

>NTDB_id=634817 LSO60_RS10440 WP_004988651.1 2160896..2161429(-) (comE) [Acinetobacter ursingii strain RIVM_C010559]
ATGAAAAAAGAAACTGGGAAAATACGCTCTCACCACGGCTATGGTTTTACTTTAATTGAGCTGATGGTAACAGTTGCAAT
TGTCGCGATTTTTGCTGCAATTGCATTCCCAAGTTATCAAGCTTATACAAGAAAAGCTTATGCTGCACAGACTCAACAGG
AAATTGAAAAACTGGCTGAGCAATTAGAACGACACAAAGCCCGTAACTTTAATTATAAAGGCTTTGATGCAAGTTTTTTG
TATAAAGATGCAAGTGGTGTTTTAATTTCAAATTTTAATAACAATAAACAAGAGCTTAGTCTTCCAGTGGATGGCTCTTC
TACGAAATACATACTTTCTATTGTAGATCAAACGGAGGGGAATCCTCTGTTGATTAACTCAACATCTTTGGGGCAGGGCT
GGGCAATTAAGGCATTAAGCACTGATGATAAGAATGATAGTTTTTTAAAAACTAGCAACGGTATTCAATGTAAAAATAAA
ACCAAAGCAAATATCACTTTTTCGGGATGTGGTGTGGGGAGCGAGATATGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(37-114)

Prokaryotic N-terminal methylation motif (N_methyl)

(15-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

59.88

94.35

0.565
  pilY2 Acinetobacter baumannii D1279779

40.936

96.61

0.395