Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LSO60_RS10435 Genome accession   NZ_CP089051
Coordinates   2160447..2160902 (-) Length   151 a.a.
NCBI ID   WP_004988647.1    Uniprot ID   A0A3F3L6Q8
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2155447..2165902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS10420 (LSO60_10400) lipA 2156355..2157368 (+) 1014 WP_263512145.1 lipoyl synthase -
  LSO60_RS10425 (LSO60_10405) - 2157619..2159622 (+) 2004 WP_263512146.1 transglutaminaseTgpA domain-containing protein -
  LSO60_RS10435 (LSO60_10415) pilE 2160447..2160902 (-) 456 WP_004988647.1 type IV pilin protein Machinery gene
  LSO60_RS10440 (LSO60_10420) comE 2160896..2161429 (-) 534 WP_004988651.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LSO60_RS10445 (LSO60_10425) - 2161434..2165384 (-) 3951 WP_263512147.1 hypothetical protein -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16429.72 Da        Isoelectric Point: 8.4503

>NTDB_id=634816 LSO60_RS10435 WP_004988647.1 2160447..2160902(-) (pilE) [Acinetobacter ursingii strain RIVM_C010559]
MVAHHQFSIDRGFTLIELMVVVAIVAILVSIAYPNYQKYAQRTKRTDAQAEMLNIAKSMMQYKNSNSSFAGATVANVYGG
TVTPQQGTALYRLTFNPSPAIATGWTLVATPIENTSQDGDGIICLNDQGQKYWTKGATTCVLSAISTWDGR

Nucleotide


Download         Length: 456 bp        

>NTDB_id=634816 LSO60_RS10435 WP_004988647.1 2160447..2160902(-) (pilE) [Acinetobacter ursingii strain RIVM_C010559]
ATGGTAGCACATCATCAATTTTCAATAGATCGCGGGTTTACTTTAATCGAGCTCATGGTGGTGGTCGCTATAGTGGCCAT
CTTAGTGTCGATAGCTTATCCAAATTATCAAAAGTATGCACAACGTACTAAAAGGACAGATGCGCAGGCGGAAATGTTAA
ATATAGCTAAAAGCATGATGCAATATAAAAACAGCAATTCATCTTTTGCAGGAGCAACGGTTGCTAACGTATATGGCGGA
ACTGTCACACCTCAACAAGGGACTGCTTTATATCGTTTAACATTTAATCCTAGTCCTGCTATTGCAACAGGATGGACATT
GGTCGCTACGCCAATAGAGAATACGTCGCAGGATGGTGATGGAATCATTTGTCTCAATGACCAAGGTCAAAAATATTGGA
CCAAAGGTGCGACCACTTGTGTTCTTTCAGCGATCTCTACGTGGGACGGTCGCTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-124)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3F3L6Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

53.901

93.377

0.503
  comF Acinetobacter baylyi ADP1

48.252

94.702

0.457