Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LSO60_RS06290 Genome accession   NZ_CP089051
Coordinates   1307208..1307915 (-) Length   235 a.a.
NCBI ID   WP_004989690.1    Uniprot ID   A0A3F3L3W5
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1302208..1312915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS06270 (LSO60_06270) - 1303340..1304659 (+) 1320 WP_004989707.1 adenylosuccinate synthase -
  LSO60_RS06275 (LSO60_06275) - 1304754..1305065 (+) 312 WP_005003779.1 hypothetical protein -
  LSO60_RS06280 (LSO60_06280) - 1305173..1305955 (+) 783 WP_263513141.1 M48 family metallopeptidase -
  LSO60_RS06285 (LSO60_06285) - 1306013..1307059 (-) 1047 WP_263513142.1 NADP(H)-dependent aldo-keto reductase -
  LSO60_RS06290 (LSO60_06290) crp 1307208..1307915 (-) 708 WP_004989690.1 cAMP-activated global transcriptional regulator CRP Regulator
  LSO60_RS06295 (LSO60_06295) - 1308065..1308487 (+) 423 WP_004989689.1 OsmC family protein -
  LSO60_RS06300 (LSO60_06300) - 1308582..1309031 (+) 450 WP_263513143.1 GNAT family N-acetyltransferase -
  LSO60_RS06305 (LSO60_06305) - 1309017..1309817 (-) 801 WP_151732405.1 peptidoglycan DD-metalloendopeptidase family protein -
  LSO60_RS06310 (LSO60_06310) clpB 1310127..1312706 (+) 2580 WP_034698760.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26495.10 Da        Isoelectric Point: 4.6785

>NTDB_id=634812 LSO60_RS06290 WP_004989690.1 1307208..1307915(-) (crp) [Acinetobacter ursingii strain RIVM_C010559]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEEKSLDDTDFDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=634812 LSO60_RS06290 WP_004989690.1 1307208..1307915(-) (crp) [Acinetobacter ursingii strain RIVM_C010559]
ATGACGTCAAACTTTTCACAACTCAGCACCGATGCTTTGTCTCCAGGTCAACTACCAGAGTCAGTCAAGGCGCTTTTAAA
ACGTGCTCATATTAATCGCTATCCAAAACGCACGACGATTGTTGACGCAGGTACCGAATCAAAATCGCTTTATTTGATTT
TGAAAGGCTCCGTTTCAATTATTTTACGTGAAGATGATGAACGTGAAATCGTAGTTGCTTATTTAAATCCTGGGGACTTT
TTTGGGGAAATGGGTCTCTTTGAATCAAATCCACAGCGTACAGCAGAAGTTCGTACACGTGATGTCTGTGAAATTGCCGA
AATTTCATATGACAATTTCCACGAACTTAGTAAGCAATATCCAGATTTAAGCTACGCGGTATTTGCCCAATTGGTACGTC
GTCTGAAAAATACGACCCGTAAAGTCACAGATTTAGCATTTATTGATGTTTCTGGTCGTATTGCACGCTGTTTGATTGAT
TTATCTGCTCAGCCAGAAGCCATGATTTTACCAAATGGTCGTCAAATTCGTATTACACGTCAGGAGATTGGCCGTATCGT
TGGTTGTTCACGCGAAATGGTCGGTCGTGTTCTTAAAACGCTTGAAGAACAAGGCATGATTGAAACCGATGGTAAAGCGA
TTCTCATTTTTGATGCATCATTAGAAGAGAAGTCTCTGGATGATACTGATTTTGATGACGAAGAATAG

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3F3L3W5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.468

100

0.945
  crp Vibrio cholerae strain A1552

48.293

87.234

0.421
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404