Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LSO60_RS01780 Genome accession   NZ_CP089051
Coordinates   375270..376700 (-) Length   476 a.a.
NCBI ID   WP_263512770.1    Uniprot ID   A0AA46S3X5
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 370270..381700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS01765 (LSO60_01760) lptG 371310..372380 (+) 1071 WP_263512767.1 LPS export ABC transporter permease LptG -
  LSO60_RS01770 (LSO60_01765) gpmI 372512..374062 (+) 1551 WP_263512768.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LSO60_RS01775 (LSO60_01770) - 374074..375252 (+) 1179 WP_263512769.1 S41 family peptidase -
  LSO60_RS01780 (LSO60_01775) pilR 375270..376700 (-) 1431 WP_263512770.1 sigma-54 dependent transcriptional regulator Regulator
  LSO60_RS01785 (LSO60_01780) pilS 376720..378288 (-) 1569 WP_263512771.1 PAS domain-containing sensor histidine kinase Regulator
  LSO60_RS01790 (LSO60_01785) - 378310..378945 (-) 636 WP_004995355.1 response regulator -
  LSO60_RS01795 (LSO60_01790) pbpG 379160..380221 (+) 1062 WP_263512772.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  LSO60_RS01800 (LSO60_01795) thrC 380323..381462 (-) 1140 WP_005001803.1 threonine synthase -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53633.56 Da        Isoelectric Point: 6.6693

>NTDB_id=634801 LSO60_RS01780 WP_263512770.1 375270..376700(-) (pilR) [Acinetobacter ursingii strain RIVM_C010559]
MVNKQPLVLLVDDEEDLCALMQMTLARMGIATHCAYRIAQAKELLQNNNYDACLTDLNLPDGNGLDLVHYVTQHWSHLPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQIHLEQLLQKAFNRPQKQIINDEDSLENRLLIGRSAPIQQLRTTLKKIARS
QAPVFVTGESGTGKEVIANLVHRLSNRSEGPFIAINCGAIPSELLESELFGHKKGSFSGATQDKQGLILSAHGGSLFLEE
IAELPLNMQVKLLRAVQEKKVRPVGSEHEIDVDFRVISASHQDLETLVQQGKFRQDLFFRIHVMDLELPPLRERGQDILL
LAHHFIQKVCAEWEIPVKILSERAQAFLLEQYFPGNVRELRNMMERAITLSDDHQIDLPHLQTAPFRYSQATAPIQHHSD
YLSSANSNHSVPTTLAGNKLPHEGLEQYLENVEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEEI

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=634801 LSO60_RS01780 WP_263512770.1 375270..376700(-) (pilR) [Acinetobacter ursingii strain RIVM_C010559]
ATGGTGAATAAACAACCGCTGGTTTTACTGGTTGATGATGAAGAAGATCTCTGTGCGTTAATGCAAATGACGCTGGCACG
TATGGGGATAGCAACACATTGTGCTTATCGTATTGCGCAGGCGAAAGAACTTCTGCAAAACAATAATTATGATGCCTGTT
TGACTGATTTAAATCTGCCTGATGGCAATGGGCTAGATCTAGTGCATTATGTTACACAGCATTGGAGTCATTTGCCGATC
GCAGTATTAACCGCCTATGGCAACATGGATATTGCAATTGCAGCACTTAAAGCAGGTGCTTTTGATTTTGTCAGTAAGCC
TGTCAACCAAATTCATTTAGAACAATTATTACAAAAAGCTTTTAATCGGCCACAAAAGCAGATCATCAATGATGAAGATA
GTCTGGAAAACAGACTGCTCATTGGCCGTTCTGCACCGATCCAGCAACTACGCACCACGCTTAAGAAAATTGCACGCTCA
CAAGCACCCGTCTTTGTCACAGGAGAATCTGGCACAGGCAAGGAAGTGATCGCCAATCTGGTGCACCGTTTAAGTAATCG
CAGTGAAGGCCCATTTATTGCCATTAACTGTGGCGCAATTCCCAGTGAACTTTTAGAGAGTGAGCTATTTGGTCACAAAA
AAGGAAGTTTTAGCGGAGCAACTCAAGACAAACAAGGTCTGATCTTATCGGCACATGGCGGTAGTTTATTTCTGGAAGAA
ATTGCTGAATTACCGTTGAATATGCAAGTTAAACTGTTACGGGCTGTACAAGAGAAAAAAGTTCGTCCAGTGGGTTCTGA
ACACGAAATTGATGTCGATTTTCGCGTCATTAGTGCCAGTCATCAGGATCTTGAAACATTGGTACAACAAGGCAAATTCC
GTCAGGATTTATTTTTTCGCATTCATGTGATGGATCTTGAACTTCCTCCATTACGTGAACGTGGACAGGACATTTTACTC
CTAGCCCATCATTTCATTCAAAAAGTGTGTGCTGAATGGGAAATTCCAGTCAAGATTCTGTCTGAACGCGCTCAGGCTTT
TTTATTAGAACAATATTTCCCCGGTAATGTTCGTGAATTACGTAATATGATGGAACGCGCCATTACTTTAAGTGATGACC
ATCAAATTGATTTACCTCACTTACAAACCGCGCCTTTTCGTTATAGCCAAGCAACGGCACCGATTCAACATCATTCTGAT
TATCTTTCTAGCGCAAATTCAAATCACTCAGTGCCTACGACATTGGCAGGCAACAAACTGCCACATGAAGGGCTAGAACA
ATATTTAGAGAATGTTGAAAAAGAGATTCTCTTAAATGCACTCAATTTGACGCATTGGAATCGTACTTTGGCGGCCAAAA
AACTAGGCATGACTTTTCGATCTTTGCGCTATCGCCTGAAAAAATTTGGTTTAGATACTGAAGAGATTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(429-469)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

76.569

100

0.769
  pilR Pseudomonas aeruginosa PAK

49.247

97.689

0.481