Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LSO60_RS01785 Genome accession   NZ_CP089051
Coordinates   376720..378288 (-) Length   522 a.a.
NCBI ID   WP_263512771.1    Uniprot ID   A0AA46S540
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 371720..383288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS01770 (LSO60_01765) gpmI 372512..374062 (+) 1551 WP_263512768.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LSO60_RS01775 (LSO60_01770) - 374074..375252 (+) 1179 WP_263512769.1 S41 family peptidase -
  LSO60_RS01780 (LSO60_01775) pilR 375270..376700 (-) 1431 WP_263512770.1 sigma-54 dependent transcriptional regulator Regulator
  LSO60_RS01785 (LSO60_01780) pilS 376720..378288 (-) 1569 WP_263512771.1 PAS domain-containing sensor histidine kinase Regulator
  LSO60_RS01790 (LSO60_01785) - 378310..378945 (-) 636 WP_004995355.1 response regulator -
  LSO60_RS01795 (LSO60_01790) pbpG 379160..380221 (+) 1062 WP_263512772.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  LSO60_RS01800 (LSO60_01795) thrC 380323..381462 (-) 1140 WP_005001803.1 threonine synthase -
  LSO60_RS01805 (LSO60_01800) - 381523..382824 (-) 1302 WP_010588808.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59556.33 Da        Isoelectric Point: 6.2674

>NTDB_id=634802 LSO60_RS01785 WP_263512771.1 376720..378288(-) (pilS) [Acinetobacter ursingii strain RIVM_C010559]
MQAQSSTPLSYTIYRLGLWYTLYRLLIVTGLIIIFQLISEQLNADYNQPVLYFYTLIAYCAASLIQFLLFKFYPQQIDRQ
LIILFVVDVIALGLLTFSLGAPNLNISLLYVITVFSAAILLPKKVSLVITLLAVISLIYQQFFSSFFDYNNLSTIGNSAL
LAFLFFVMYGIGQVAVKHFKILENISFRQSQALYQLQNINRYILEQIDDGYLVLDENYHVVLSNPAACTLLGIPPLFAHE
QLPLAKTQPDLFELLRFDPLEDGEQFIFESQLSTYNVHIKVQRLIVPHQALILLRLQDVQQLNQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELYIGSKSEQQHLLQKMISKQSKRINDIIEDTLRMARNDTTHPMLIELDSFLSHLLTEDLSDVQ
HQIHLEMTEKVIVQFDPKQLTQVLINLIRNALRHNDPDVDQIVLSVRMVQAEVFIDVIDFGNGIEKRDISQLFKPFFSTE
IKGTGLGLYLSHSLCEANHAKLSYVEQQKGACFRIQCSTKDK

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=634802 LSO60_RS01785 WP_263512771.1 376720..378288(-) (pilS) [Acinetobacter ursingii strain RIVM_C010559]
ATGCAGGCGCAATCTTCTACGCCACTTTCTTATACGATTTACCGTTTAGGTTTGTGGTACACCCTTTACCGCCTGCTTAT
TGTCACAGGTTTAATCATTATTTTTCAGCTCATTTCTGAGCAGTTAAATGCCGACTATAATCAACCTGTATTGTATTTTT
ATACGCTTATCGCTTATTGCGCAGCCAGTCTGATTCAGTTTTTATTGTTTAAATTTTATCCACAACAGATTGATCGTCAA
TTGATTATACTGTTTGTGGTTGATGTCATCGCATTGGGGTTGTTGACGTTTTCTCTGGGCGCACCAAATTTAAATATTAG
TTTGCTGTATGTTATTACGGTGTTTTCTGCCGCGATTTTACTGCCCAAAAAAGTCTCTTTGGTGATCACGCTTCTTGCTG
TTATTTCACTGATCTATCAACAGTTTTTTTCAAGTTTCTTTGATTATAATAATTTAAGCACCATTGGAAATAGTGCTTTA
CTGGCTTTTTTGTTTTTTGTCATGTATGGCATTGGTCAGGTTGCTGTAAAACATTTTAAAATTCTGGAAAATATTAGCTT
TCGTCAATCCCAAGCGCTGTATCAACTTCAAAATATTAATCGTTATATTTTAGAACAAATTGATGATGGCTATCTGGTAT
TAGATGAAAACTACCATGTGGTGCTCAGCAATCCAGCCGCCTGTACGCTGTTGGGTATTCCACCATTATTTGCGCATGAA
CAACTTCCGTTGGCCAAAACTCAGCCCGATTTATTTGAGCTCTTAAGATTTGATCCCTTAGAAGACGGCGAACAGTTTAT
TTTTGAATCACAACTGTCTACTTATAACGTGCATATTAAGGTACAACGTTTGATCGTCCCTCATCAGGCTTTAATTTTAT
TGCGCTTGCAGGATGTGCAGCAGCTCAATCAACAGGTTCAACAGCTTAAACTTGCCGCTTTAGGACAACTTTCCGCCAGT
ATTGCACACGAAATTCGTAACCCATTGGCAGCGATTGTACAGGCCAATGAACTGTATATTGGCAGCAAATCTGAACAGCA
ACATTTACTGCAAAAAATGATCAGTAAACAATCAAAACGTATCAATGATATTATTGAAGATACATTGCGTATGGCGCGTA
ATGACACCACGCATCCGATGCTGATTGAATTAGATAGCTTTTTGTCTCATTTACTGACTGAAGATTTATCCGATGTTCAA
CATCAAATCCATTTGGAAATGACCGAGAAGGTAATCGTTCAATTTGATCCAAAACAGTTAACCCAAGTTTTAATCAACCT
GATTCGCAATGCATTACGCCATAATGATCCAGATGTTGATCAGATTGTTTTATCCGTACGTATGGTTCAAGCTGAAGTAT
TCATTGATGTGATTGATTTTGGCAATGGCATCGAAAAACGTGATATATCGCAACTATTTAAGCCATTTTTTAGTACCGAA
ATCAAGGGAACTGGTTTAGGATTATATTTGTCCCATAGTCTGTGTGAAGCCAATCACGCCAAGCTCAGTTATGTGGAACA
ACAAAAAGGAGCATGTTTTAGAATTCAATGTTCAACAAAAGATAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-376)

PAS domain (PAS_8)

(201-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

63.514

99.234

0.63