Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LSO58_RS10965 Genome accession   NZ_CP089044
Coordinates   2293060..2293767 (+) Length   235 a.a.
NCBI ID   WP_004989690.1    Uniprot ID   A0A3F3L3W5
Organism   Acinetobacter ursingii strain RIVM_C010761     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2288060..2298767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO58_RS10945 (LSO58_10915) clpB 2288265..2290844 (-) 2580 WP_263503532.1 ATP-dependent chaperone ClpB -
  LSO58_RS10950 (LSO58_10920) - 2291154..2291956 (+) 803 Protein_2141 peptidoglycan DD-metalloendopeptidase family protein -
  LSO58_RS10955 (LSO58_10925) - 2291958..2292392 (-) 435 WP_010588778.1 GNAT family N-acetyltransferase -
  LSO58_RS10960 (LSO58_10930) - 2292488..2292910 (-) 423 WP_004989689.1 OsmC family protein -
  LSO58_RS10965 (LSO58_10935) crp 2293060..2293767 (+) 708 WP_004989690.1 cAMP-activated global transcriptional regulator CRP Regulator
  LSO58_RS10970 (LSO58_10940) - 2293916..2294962 (+) 1047 WP_004989699.1 NADP(H)-dependent aldo-keto reductase -
  LSO58_RS10975 (LSO58_10945) - 2295020..2295802 (-) 783 WP_104795006.1 M48 family metallopeptidase -
  LSO58_RS10980 (LSO58_10950) - 2295910..2296221 (-) 312 WP_004989705.1 hypothetical protein -
  LSO58_RS10985 (LSO58_10955) - 2296317..2297636 (-) 1320 WP_004989707.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26495.10 Da        Isoelectric Point: 4.6785

>NTDB_id=634781 LSO58_RS10965 WP_004989690.1 2293060..2293767(+) (crp) [Acinetobacter ursingii strain RIVM_C010761]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEEKSLDDTDFDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=634781 LSO58_RS10965 WP_004989690.1 2293060..2293767(+) (crp) [Acinetobacter ursingii strain RIVM_C010761]
ATGACGTCAAACTTTTCACAACTCAGCACCGATGCTTTATCTCCAGGTCAACTACCAGAGTCAGTCAAGGCGCTTTTAAA
ACGTGCTCATATTAATCGCTATCCAAAACGCACGACGATTGTTGACGCAGGTACCGAATCAAAATCGCTTTATTTGATTT
TGAAAGGCTCCGTTTCAATTATTTTACGTGAAGATGATGAACGTGAAATCGTAGTTGCTTATTTAAATCCTGGGGACTTT
TTTGGGGAAATGGGTCTCTTTGAATCAAATCCACAGCGTACAGCAGAAGTTCGTACACGTGATGTCTGTGAAATTGCCGA
AATTTCATATGACAATTTCCACGAACTTAGTAAGCAATATCCAGATTTAAGCTACGCGGTATTTGCCCAATTGGTACGTC
GTCTGAAAAATACGACCCGTAAAGTCACAGATTTAGCATTTATTGATGTTTCTGGTCGTATTGCGCGTTGTCTCATCGAT
TTATCAGCTCAACCAGAAGCCATGATTTTACCGAACGGTCGTCAAATCCGTATTACGCGTCAGGAAATTGGACGTATCGT
AGGCTGCTCACGCGAAATGGTTGGCCGTGTTCTTAAGACACTTGAAGAACAAGGTATGATTGAAACTGATGGTAAAGCAA
TTCTCATTTTCGATGCATCATTAGAAGAGAAGTCTCTGGATGATACTGATTTTGATGACGAAGAATAG

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3F3L3W5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.468

100

0.945
  crp Vibrio cholerae strain A1552

48.293

87.234

0.421
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404