Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/comEC   Type   Machinery gene
Locus tag   LSO59_RS12380 Genome accession   NZ_CP089038
Coordinates   2657643..2660099 (-) Length   818 a.a.
NCBI ID   WP_216069142.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2655547..2704684 2657643..2660099 within 0


Gene organization within MGE regions


Location: 2655547..2704684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS12370 (LSO59_12345) sppA 2655547..2656563 (-) 1017 WP_004990442.1 signal peptide peptidase SppA -
  LSO59_RS12375 (LSO59_12350) - 2656700..2657674 (+) 975 WP_151829522.1 lysophospholipid acyltransferase family protein -
  LSO59_RS12380 (LSO59_12355) comA/comEC 2657643..2660099 (-) 2457 WP_216069142.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LSO59_RS12385 (LSO59_12360) lolD 2660186..2660875 (-) 690 WP_151829523.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  LSO59_RS12390 (LSO59_12365) - 2660868..2662103 (-) 1236 WP_151829524.1 lipoprotein-releasing ABC transporter permease subunit -
  LSO59_RS12395 (LSO59_12370) - 2662130..2662699 (+) 570 WP_004990450.1 PilZ domain-containing protein -
  LSO59_RS12400 (LSO59_12375) - 2662717..2663652 (-) 936 WP_004990452.1 DMT family transporter -
  LSO59_RS12405 (LSO59_12380) - 2663662..2664135 (-) 474 WP_004990454.1 YaiI/YqxD family protein -
  LSO59_RS12410 (LSO59_12385) - 2664308..2665246 (+) 939 WP_004996412.1 hypothetical protein -
  LSO59_RS12415 (LSO59_12390) - 2665706..2665909 (+) 204 WP_263505527.1 hypothetical protein -
  LSO59_RS12420 (LSO59_12395) - 2665963..2666547 (+) 585 WP_263505528.1 helix-turn-helix domain-containing protein -
  LSO59_RS12425 (LSO59_12400) csy3 2666492..2667556 (+) 1065 WP_263505749.1 type I-F CRISPR-associated protein Csy3 -
  LSO59_RS12430 (LSO59_12405) - 2667584..2667868 (+) 285 WP_263505529.1 hypothetical protein -
  LSO59_RS12435 (LSO59_12410) - 2667892..2668692 (-) 801 WP_263505530.1 glycoside hydrolase family 108 protein -
  LSO59_RS12440 (LSO59_12415) - 2668679..2668984 (-) 306 WP_263505531.1 phage holin family protein -
  LSO59_RS12445 (LSO59_12420) - 2669044..2669220 (-) 177 WP_263505532.1 hypothetical protein -
  LSO59_RS12450 (LSO59_12425) - 2669232..2674109 (-) 4878 WP_263505533.1 phage tail protein -
  LSO59_RS12455 (LSO59_12430) - 2674166..2674819 (-) 654 WP_263505534.1 tail assembly protein -
  LSO59_RS12460 (LSO59_12435) - 2674803..2675597 (-) 795 WP_263505535.1 C40 family peptidase -
  LSO59_RS12465 (LSO59_12440) - 2675601..2676413 (-) 813 WP_263505536.1 phage minor tail protein L -
  LSO59_RS12470 (LSO59_12445) - 2676400..2677257 (-) 858 WP_263505537.1 pyocin knob domain-containing protein -
  LSO59_RS12475 (LSO59_12450) - 2677315..2677659 (-) 345 WP_262458551.1 phage tail protein -
  LSO59_RS12480 (LSO59_12455) - 2677656..2681342 (-) 3687 WP_263505538.1 transglycosylase SLT domain-containing protein -
  LSO59_RS12485 (LSO59_12460) - 2681413..2681823 (-) 411 WP_151788484.1 hypothetical protein -
  LSO59_RS12490 (LSO59_12465) - 2681826..2682698 (-) 873 WP_151788483.1 exonuclease domain-containing protein -
  LSO59_RS12495 (LSO59_12470) - 2682766..2683539 (-) 774 WP_263505539.1 phage antirepressor N-terminal domain-containing protein -
  LSO59_RS12500 (LSO59_12475) - 2683930..2684142 (-) 213 WP_263505540.1 hypothetical protein -
  LSO59_RS12505 (LSO59_12480) - 2684154..2684687 (-) 534 WP_151788480.1 phage tail assembly chaperone family protein, TAC -
  LSO59_RS12510 (LSO59_12485) - 2684727..2685194 (-) 468 WP_263505541.1 phage tail tube protein -
  LSO59_RS12515 (LSO59_12490) - 2685266..2685616 (-) 351 WP_151788478.1 tail completion protein gp17 -
  LSO59_RS12520 (LSO59_12495) - 2685613..2686089 (-) 477 WP_263505750.1 HK97-gp10 family putative phage morphogenesis protein -
  LSO59_RS12525 (LSO59_12500) - 2686102..2686452 (-) 351 WP_151788477.1 phage head closure protein -
  LSO59_RS12530 (LSO59_12505) - 2686456..2686695 (-) 240 WP_151788476.1 hypothetical protein -
  LSO59_RS12535 (LSO59_12510) - 2686747..2686890 (-) 144 WP_171495179.1 hypothetical protein -
  LSO59_RS12540 (LSO59_12515) - 2687035..2687307 (-) 273 WP_228268502.1 head-tail connector protein -
  LSO59_RS12545 (LSO59_12520) - 2687300..2688568 (-) 1269 WP_228268501.1 phage portal protein -
  LSO59_RS12550 (LSO59_12525) - 2688582..2688890 (-) 309 WP_151788474.1 hypothetical protein -
  LSO59_RS12555 (LSO59_12530) - 2688949..2690265 (-) 1317 WP_373866609.1 phage major capsid protein -
  LSO59_RS12560 (LSO59_12535) - 2690268..2690888 (-) 621 WP_151788472.1 HK97 family phage prohead protease -
  LSO59_RS12565 (LSO59_12540) - 2691159..2691449 (-) 291 WP_228268504.1 hypothetical protein -
  LSO59_RS12570 (LSO59_12545) - 2691446..2693137 (-) 1692 WP_262458544.1 terminase large subunit -
  LSO59_RS12575 (LSO59_12550) - 2693138..2693587 (-) 450 WP_262458543.1 hypothetical protein -
  LSO59_RS12580 (LSO59_12555) - 2693818..2694063 (-) 246 WP_151788469.1 hypothetical protein -
  LSO59_RS12585 (LSO59_12560) - 2694060..2694368 (-) 309 WP_262458542.1 HNH endonuclease -
  LSO59_RS12590 (LSO59_12565) - 2694370..2694729 (-) 360 WP_263505542.1 hypothetical protein -
  LSO59_RS12595 (LSO59_12570) - 2694893..2695357 (-) 465 WP_151788466.1 hypothetical protein -
  LSO59_RS12600 (LSO59_12575) - 2695717..2697357 (-) 1641 WP_263505543.1 DUF5906 domain-containing protein -
  LSO59_RS12605 (LSO59_12580) - 2697543..2698451 (-) 909 WP_263505544.1 primase-helicase zinc-binding domain-containing protein -
  LSO59_RS12610 (LSO59_12585) - 2698454..2699050 (-) 597 WP_263505545.1 hypothetical protein -
  LSO59_RS12615 (LSO59_12590) - 2699047..2699547 (-) 501 WP_151788462.1 phage regulatory CII family protein -
  LSO59_RS12620 (LSO59_12595) - 2699594..2699854 (-) 261 WP_228268500.1 hypothetical protein -
  LSO59_RS12625 (LSO59_12600) - 2700019..2700765 (+) 747 WP_262458537.1 hypothetical protein -
  LSO59_RS12630 (LSO59_12605) - 2700937..2701245 (+) 309 WP_262458536.1 hypothetical protein -
  LSO59_RS12635 (LSO59_12610) - 2701248..2701913 (+) 666 WP_263505546.1 hypothetical protein -
  LSO59_RS12640 (LSO59_12615) - 2701993..2702460 (+) 468 WP_262458534.1 hypothetical protein -
  LSO59_RS12645 (LSO59_12620) - 2702457..2703038 (+) 582 WP_263505547.1 3'-5' exonuclease -
  LSO59_RS12650 (LSO59_12625) - 2703025..2703270 (+) 246 WP_262458532.1 hypothetical protein -
  LSO59_RS12655 (LSO59_12630) - 2703263..2703472 (+) 210 WP_151788454.1 hypothetical protein -
  LSO59_RS12660 (LSO59_12635) - 2703473..2704684 (-) 1212 WP_262458531.1 tyrosine-type recombinase/integrase -

Sequence


Protein


Download         Length: 818 a.a.        Molecular weight: 93427.70 Da        Isoelectric Point: 8.7741

>NTDB_id=634741 LSO59_RS12380 WP_216069142.1 2657643..2660099(-) (comA/comEC) [Acinetobacter ursingii strain RIVM_C011601]
MLKIILLGWIAGISLMGYSLPYLKSISVYFIVFVLILWMIYFVKIKTCSENISFKAVLIASSTFGMLILGDLYADHALTE
HLKYKEMTSRRASEVIYIRKIGESTEHGIKQPIEILSQNKPTVIWLAYIDDQFLENMRINNNSLALGQYYQVQGIVKPVH
GYANAGGFDQEKWFVQQNWMSGFQVQQIQPLSMQQVYGLGFQQHLKQQNNVWRKFGLNIEQLRLDFRIQLQQQPLKYKAL
MLALLTGDRSLLDKNTEQMFQRFGISHLLAISGPHVLILAALFTWLLSSIIHKYQPTLYLRFPRKILMIVPFCSCVFIYT
AFVGFEIPALRTLLFTLIASLFLIFKHEIRPFNLLLYTASLSVWIDPLSILSAAFWLSYGACFILLNIYQSMQHQSDSVP
NLSQKIWKNSKILVQSQWKIFIALCPLVLIFFKQLSWIAPIANLIVIPFLGGVIVPLGIIAACICLIIPSLGQLLFHIND
LLISLLFFILNGLDHLFQPELYAFALTPMLLLSFSLGIVLLFLPRGSIPKSWAVLCICPIFLLAWIKRDTQISLIDVGQG
QSVFVQDASLRMLIDTGGYYDESKFSIGQNVVVPYLKSQGVAQLDRILLSHLDQDHSGALAAVLQQTRVKHLMANETLPQ
PTLSLQTDASFSRCHTGQTWQTSEIRLQILSPEPVDDQTIQYNRNEYSCVVYLELLKANGLRRFLIMGDAGWETEYQILQ
KYPDLKVDVLVLGHHGSKHSSSYDFLKHYQPKIAVASVGYTNRYGHPSLETLSRLDALHIPLYTTIQSGTITFKVEDHQV
KLEQYRNTVKWLNLYESY

Nucleotide


Download         Length: 2457 bp        

>NTDB_id=634741 LSO59_RS12380 WP_216069142.1 2657643..2660099(-) (comA/comEC) [Acinetobacter ursingii strain RIVM_C011601]
ATGTTAAAAATTATATTGTTGGGATGGATTGCAGGCATCAGTTTGATGGGATATTCATTGCCTTACCTGAAATCGATCAG
CGTTTATTTTATTGTATTTGTTTTGATTTTATGGATGATTTATTTTGTAAAAATAAAAACATGCAGCGAAAATATATCCT
TTAAAGCAGTTCTAATCGCAAGTTCAACATTTGGTATGTTGATACTTGGTGATCTATACGCAGATCATGCCTTGACTGAA
CATCTTAAATATAAAGAAATGACGTCAAGAAGGGCATCTGAAGTCATCTATATTCGAAAAATCGGAGAAAGTACAGAACA
CGGAATTAAGCAGCCTATTGAAATTTTATCTCAAAATAAACCTACTGTTATATGGCTAGCCTATATTGATGATCAGTTTT
TAGAAAATATGCGGATTAACAATAATAGCTTAGCGCTGGGACAATATTATCAGGTACAAGGAATCGTGAAGCCTGTGCAT
GGTTATGCGAATGCAGGAGGATTCGATCAGGAAAAGTGGTTTGTTCAGCAAAACTGGATGTCAGGCTTTCAAGTCCAACA
GATTCAGCCCCTATCGATGCAACAAGTTTATGGTTTGGGTTTTCAGCAACATCTCAAACAGCAAAACAATGTCTGGCGAA
AATTTGGTCTAAATATTGAGCAATTGCGACTGGATTTTCGTATTCAATTACAACAGCAACCTCTGAAATATAAAGCATTG
ATGCTGGCGCTGTTGACAGGTGATCGCAGTTTATTGGATAAAAATACGGAACAAATGTTTCAGCGCTTTGGTATTTCACA
TTTATTGGCGATCTCTGGTCCACATGTACTCATCTTGGCGGCATTATTTACATGGTTACTAAGCTCCATAATCCATAAAT
ACCAGCCCACACTTTATTTAAGATTTCCCAGAAAAATTTTAATGATTGTGCCATTTTGTAGTTGTGTTTTTATTTATACC
GCATTTGTGGGCTTTGAAATTCCAGCATTACGCACCTTACTATTCACCCTGATTGCCAGTTTATTCTTAATCTTTAAACA
TGAAATTCGACCGTTTAATTTGCTGTTATATACCGCAAGTCTGAGTGTATGGATTGATCCATTGAGTATTTTATCGGCTG
CTTTTTGGTTATCTTATGGTGCTTGTTTTATTTTATTAAATATTTATCAATCCATGCAGCATCAGTCAGATTCAGTACCT
AATCTAAGTCAAAAGATCTGGAAAAACAGCAAAATATTGGTTCAATCGCAATGGAAAATTTTTATTGCTTTATGTCCATT
GGTGCTTATATTTTTTAAACAGCTGTCTTGGATCGCACCGATTGCCAATCTGATTGTGATCCCATTTTTAGGTGGGGTGA
TCGTGCCACTGGGCATTATTGCAGCTTGTATCTGTTTGATCATTCCGTCTTTGGGACAGCTACTTTTTCATATTAATGAC
TTATTAATAAGTCTTTTATTTTTTATTTTAAACGGTCTGGATCATCTTTTTCAGCCTGAGCTGTATGCATTTGCTTTAAC
TCCCATGCTTTTGCTCAGTTTTAGTCTCGGTATTGTGTTGTTATTTTTACCTAGAGGTAGTATTCCAAAGTCATGGGCAG
TGTTATGTATTTGTCCCATATTTTTATTGGCATGGATTAAACGGGATACACAGATATCGTTGATTGATGTAGGGCAAGGG
CAGTCTGTTTTTGTACAAGATGCATCTCTGCGTATGCTGATTGATACGGGCGGTTATTATGATGAAAGCAAATTTAGTAT
TGGTCAAAATGTTGTGGTTCCTTATTTAAAATCTCAAGGGGTTGCACAACTTGATCGTATTTTACTTTCTCACTTGGATC
AGGATCATAGTGGAGCGCTTGCTGCTGTTTTGCAGCAAACCAGAGTCAAGCATTTAATGGCCAATGAAACCCTACCACAG
CCCACATTATCGTTACAAACAGATGCTTCTTTTTCCAGATGTCATACGGGTCAAACATGGCAGACTTCAGAGATACGCTT
ACAAATACTCTCTCCAGAACCTGTTGATGATCAAACAATTCAATACAACCGAAATGAATATTCCTGTGTGGTCTATCTGG
AGCTGTTAAAGGCGAATGGTTTACGTCGATTTTTAATTATGGGCGATGCGGGATGGGAGACCGAATATCAAATTTTGCAA
AAGTATCCCGACTTAAAAGTTGATGTTTTGGTGTTGGGGCATCATGGTAGCAAGCATAGCTCATCTTATGATTTTTTAAA
GCATTATCAGCCTAAAATCGCGGTTGCATCCGTTGGATATACCAATCGTTATGGACATCCGAGTTTAGAAACCTTATCTA
GATTAGACGCATTACATATTCCGCTTTATACCACGATCCAGTCAGGAACGATCACGTTTAAGGTGGAAGATCATCAAGTA
AAACTGGAACAATATCGAAATACAGTTAAGTGGCTGAATCTGTACGAGTCATATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baylyi ADP1

53.629

99.389

0.533

  comA/comEC Acinetobacter baumannii strain A118

49.509

99.511

0.493

  comA/comEC Acinetobacter baumannii D1279779

49.14

99.511

0.489