Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LSO59_RS01625 Genome accession   NZ_CP089038
Coordinates   344592..346022 (-) Length   476 a.a.
NCBI ID   WP_026039946.1    Uniprot ID   A0AA46S9Z2
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 339592..351022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS01610 (LSO59_01605) lptG 340629..341699 (+) 1071 WP_010588813.1 LPS export ABC transporter permease LptG -
  LSO59_RS01615 (LSO59_01610) gpmI 341831..343381 (+) 1551 WP_010588812.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LSO59_RS01620 (LSO59_01615) - 343396..344574 (+) 1179 WP_004995358.1 S41 family peptidase -
  LSO59_RS01625 (LSO59_01620) pilR 344592..346022 (-) 1431 WP_026039946.1 sigma-54-dependent transcriptional regulator Regulator
  LSO59_RS01630 (LSO59_01625) pilS 346042..347610 (-) 1569 WP_010588809.1 ATP-binding protein Regulator
  LSO59_RS01635 (LSO59_01630) - 347632..348267 (-) 636 WP_004995355.1 response regulator -
  LSO59_RS01640 (LSO59_01635) pbpG 348482..349543 (+) 1062 WP_104794821.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  LSO59_RS01645 (LSO59_01640) thrC 349645..350784 (-) 1140 WP_005001803.1 threonine synthase -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53692.58 Da        Isoelectric Point: 6.6692

>NTDB_id=634721 LSO59_RS01625 WP_026039946.1 344592..346022(-) (pilR) [Acinetobacter ursingii strain RIVM_C011601]
MVNKQPLVLLVDDEEDLCALMQMTLARMGIATHCAYRIAQAKELLQNNNYDACLTDLNLPDGNGLDLVHYVTQHWSHLPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQIHLEQLLQKAFNRPQKQVINDEDSLENRLLIGRSAPIQQLRTTLKKIARS
QAPVFVTGESGTGKEVIANLVHRLSNRSEGPFIAINCGAIPSELLESELFGHKKGSFSGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKVRPVGSEHEIDVDFRVISASHQDLETLVQQGKFRQDLFFRIHVMDLELPPLRERGQDILL
LAHHFIQKVCAEWEIPVKILSERAQTFLLEQYFPGNVRELRNMMERAITLSDDHQIDLPHLQTAPFRYSQATAPIQHHSD
YLSSANSNHSVPTTLANNKLPHEGLEQYLENVEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEEI

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=634721 LSO59_RS01625 WP_026039946.1 344592..346022(-) (pilR) [Acinetobacter ursingii strain RIVM_C011601]
ATAGTGAATAAACAACCGCTGGTTTTACTGGTTGATGATGAAGAAGATCTCTGTGCGTTAATGCAAATGACGCTAGCGCG
TATGGGGATAGCAACACATTGTGCTTATCGTATTGCGCAGGCGAAAGAACTTCTGCAAAACAATAATTATGATGCCTGTT
TGACTGATTTAAATCTGCCTGATGGCAATGGGCTAGATCTAGTGCATTATGTTACACAGCATTGGAGTCACTTGCCGATC
GCAGTATTAACCGCCTATGGCAACATGGATATTGCAATTGCAGCACTTAAAGCAGGTGCTTTTGATTTTGTCAGTAAACC
TGTCAACCAAATCCATTTAGAACAATTATTACAAAAAGCTTTTAATCGACCACAAAAACAGGTCATCAATGATGAAGATA
GTCTGGAAAACAGACTGCTCATTGGCCGTTCTGCACCGATCCAGCAACTACGCACCACTCTTAAGAAAATTGCACGCTCA
CAAGCACCCGTCTTTGTCACAGGAGAATCTGGCACAGGCAAGGAAGTGATCGCCAATCTGGTGCACCGTTTAAGTAATCG
CAGCGAAGGCCCATTTATTGCCATTAACTGTGGCGCAATTCCCAGTGAACTTTTAGAGAGTGAGCTATTTGGTCACAAAA
AAGGAAGTTTTAGCGGTGCAACTCAAGACAAACAAGGTCTGATCTTATCGGCACATGGCGGTAGTTTATTTCTGGATGAA
ATTGCTGAATTACCGTTGAATATGCAGGTTAAACTGTTACGGGCTGTACAAGAGAAAAAAGTTCGTCCAGTGGGTTCTGA
ACACGAAATTGATGTGGATTTCCGCGTGATTAGTGCCAGTCATCAGGATCTTGAAACATTGGTACAACAAGGCAAATTCC
GTCAGGATTTATTTTTCCGCATTCATGTGATGGACCTTGAACTCCCTCCATTACGTGAACGTGGACAGGACATTTTACTC
CTCGCCCATCATTTTATTCAAAAAGTGTGTGCTGAATGGGAAATTCCAGTCAAAATTCTGTCTGAACGCGCTCAGACTTT
TTTATTAGAACAATATTTCCCCGGTAATGTTCGTGAATTACGTAATATGATGGAACGTGCCATTACTTTAAGTGATGACC
ATCAAATTGATTTACCTCACTTACAAACCGCACCTTTTCGTTATAGCCAAGCAACGGCACCGATTCAACATCATTCTGAT
TATCTTTCTAGCGCAAATTCAAATCACTCAGTTCCTACGACATTGGCAAACAACAAACTGCCACACGAAGGGTTAGAACA
ATATTTAGAAAACGTTGAAAAAGAGATTCTCTTAAATGCACTCAATTTGACGCATTGGAATCGTACTTTGGCGGCCAAAA
AACTAGGCATGACTTTTCGATCTTTGCGCTATCGCCTGAAAAAATTTGGTTTAGATACTGAAGAGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(429-469)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

76.987

100

0.773
  pilR Pseudomonas aeruginosa PAK

49.462

97.689

0.483