Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LSO59_RS01630 Genome accession   NZ_CP089038
Coordinates   346042..347610 (-) Length   522 a.a.
NCBI ID   WP_010588809.1    Uniprot ID   A0A3F3L610
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 341042..352610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS01615 (LSO59_01610) gpmI 341831..343381 (+) 1551 WP_010588812.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LSO59_RS01620 (LSO59_01615) - 343396..344574 (+) 1179 WP_004995358.1 S41 family peptidase -
  LSO59_RS01625 (LSO59_01620) pilR 344592..346022 (-) 1431 WP_026039946.1 sigma-54-dependent transcriptional regulator Regulator
  LSO59_RS01630 (LSO59_01625) pilS 346042..347610 (-) 1569 WP_010588809.1 ATP-binding protein Regulator
  LSO59_RS01635 (LSO59_01630) - 347632..348267 (-) 636 WP_004995355.1 response regulator -
  LSO59_RS01640 (LSO59_01635) pbpG 348482..349543 (+) 1062 WP_104794821.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  LSO59_RS01645 (LSO59_01640) thrC 349645..350784 (-) 1140 WP_005001803.1 threonine synthase -
  LSO59_RS01650 (LSO59_01645) - 350845..352146 (-) 1302 WP_010588808.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59646.41 Da        Isoelectric Point: 6.1856

>NTDB_id=634722 LSO59_RS01630 WP_010588809.1 346042..347610(-) (pilS) [Acinetobacter ursingii strain RIVM_C011601]
MQAQSSTPLSYTIYRLGLWYTLYRLLIVTGLIIIFQLISEQLNADYNQPVLYFYTLIAYCVASLIQFLLFKFYPRQIDRQ
LIIVFVVDVIALGLLTFSLGAPNLNISLLYVITVFSAAILLPRKVSLVITLLAVISLIYQQFFSSFFDYNNLSTIGNSAL
LAFLFFVMYGIGQVAVKHFKILENISFRQSQALYQLQNINRYILEQIDDGYLVLDENYHVVLSNPAACTLLGIPPLFAHE
QLPLAKTQPDLFELLRFDPLEDGEQFIFESQLSTYNVHIKVQRLIVPHQALILLRLQDVQQLNQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELYIGSESEQQHLLQKMISKQSKRINDIIEDTLRMARNDTTHPMLIELDSFLSHLLTEDLSDVQ
HQIRLEMTEKVIVQFDPKQLTQVLINLIRNALRHNDPDVDQIVLSVRMVQAEVFIDVIDFGNGIEKRDISQLFKPFFSTE
IKGTGLGLYLSHSLCEANHAKLSYVEQQKGACFRIQCSTKDK

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=634722 LSO59_RS01630 WP_010588809.1 346042..347610(-) (pilS) [Acinetobacter ursingii strain RIVM_C011601]
ATGCAGGCGCAATCTTCTACGCCACTTTCTTATACGATTTACCGTTTAGGTTTGTGGTACACCCTTTACCGCCTGCTTAT
TGTCACAGGTTTAATCATTATTTTTCAGCTCATTTCTGAGCAGTTAAATGCCGACTATAATCAACCTGTATTGTATTTTT
ATACGCTTATCGCTTATTGCGTAGCCAGTCTGATTCAGTTTTTATTGTTTAAGTTTTATCCACGACAGATTGATCGTCAA
CTGATTATAGTGTTTGTGGTTGATGTCATTGCATTGGGATTGCTGACATTTTCTCTGGGCGCACCAAATTTAAATATTAG
TTTGCTGTATGTTATTACGGTGTTTTCTGCCGCGATTTTACTGCCCAGAAAAGTCTCTTTGGTGATCACGCTTCTTGCTG
TTATTTCACTGATCTATCAACAGTTTTTTTCAAGTTTTTTTGATTATAATAATTTAAGCACCATTGGAAATAGTGCTTTA
CTGGCTTTTTTGTTTTTTGTCATGTATGGCATTGGTCAAGTTGCTGTAAAACATTTTAAAATTCTGGAAAATATTAGCTT
TCGTCAATCCCAAGCGCTATATCAACTTCAAAATATTAATCGTTATATTTTAGAACAAATTGATGATGGCTATCTGGTAT
TAGATGAAAACTACCATGTGGTGCTCAGCAATCCAGCCGCCTGTACGCTGTTGGGCATTCCGCCATTATTTGCGCATGAA
CAACTTCCGTTGGCCAAAACCCAGCCCGATTTATTTGAGCTTTTAAGATTTGATCCCTTAGAAGACGGCGAACAATTTAT
TTTTGAATCACAACTGTCTACTTATAACGTGCATATCAAGGTACAACGCTTGATCGTGCCACATCAGGCTTTAATTTTAT
TGCGCTTGCAGGATGTGCAGCAGCTCAATCAACAGGTTCAACAGCTTAAACTTGCCGCTTTAGGACAACTTTCCGCCAGT
ATTGCCCACGAAATTCGTAACCCATTGGCAGCGATTGTACAGGCCAATGAACTGTATATTGGCAGCGAATCTGAACAGCA
ACATTTACTGCAAAAAATGATCAGTAAACAATCAAAACGTATCAATGATATTATTGAAGATACATTGCGTATGGCGCGCA
ATGACACCACGCATCCGATGCTGATTGAGTTAGATAGCTTTTTGTCTCATTTACTGACTGAAGATTTATCCGATGTTCAA
CATCAAATCCGCTTGGAGATGACCGAGAAGGTAATCGTTCAATTTGATCCAAAACAGTTAACCCAAGTTTTAATCAACCT
GATTCGCAATGCATTACGCCATAATGATCCAGATGTTGATCAGATTGTATTATCCGTACGTATGGTTCAAGCTGAAGTAT
TCATTGATGTGATTGATTTTGGCAATGGCATCGAAAAACGTGATATATCGCAACTATTTAAGCCATTTTTTAGTACCGAA
ATCAAGGGAACTGGTTTAGGATTATATTTGTCCCATAGTCTGTGTGAAGCCAATCACGCCAAGCTCAGTTATGTGGAACA
ACAAAAAGGAGCATGTTTTAGAATTCAATGCTCAACAAAAGATAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-376)

PAS domain (PAS_8)

(201-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3F3L610

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

63.514

99.234

0.63