Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LRO84_RS17390 Genome accession   NZ_CP088955
Coordinates   3670637..3672055 (+) Length   472 a.a.
NCBI ID   WP_231762081.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3665637..3677055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS17370 (LRO84_17370) thrC 3665891..3667030 (+) 1140 WP_003654438.1 threonine synthase -
  LRO84_RS17375 (LRO84_17375) pbpG 3667140..3668186 (-) 1047 WP_231762079.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  LRO84_RS17380 (LRO84_17380) - 3668399..3669034 (+) 636 WP_003654436.1 response regulator -
  LRO84_RS17385 (LRO84_17385) pilS 3669044..3670612 (+) 1569 WP_231762080.1 sensor histidine kinase Regulator
  LRO84_RS17390 (LRO84_17390) pilR 3670637..3672055 (+) 1419 WP_231762081.1 sigma-54-dependent transcriptional regulator Regulator
  LRO84_RS17395 (LRO84_17395) - 3672060..3673244 (-) 1185 WP_231762082.1 S41 family peptidase -
  LRO84_RS17400 (LRO84_17400) gpmI 3673260..3674807 (-) 1548 WP_231762083.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LRO84_RS17405 (LRO84_17405) lptG 3674934..3676004 (-) 1071 WP_231762084.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 52986.12 Da        Isoelectric Point: 6.1987

>NTDB_id=634226 LRO84_RS17390 WP_231762081.1 3670637..3672055(+) (pilR) [Acinetobacter calcoaceticus strain ARu19]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYSQTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVRQGKFRQDLFFRIHVMDIMLPPLRERGGDILL
LANHFIQKVCMEWEIPSKQLTTTAETYLLQQDFPGNVRELRNMIERAITLSDDECIDLTHLAPPLRGSSVNSQITTKQVN
DTSTAITQTRPKLPMEGLERYLENIEKDILLNALDMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTELGEEV

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=634226 LRO84_RS17390 WP_231762081.1 3670637..3672055(+) (pilR) [Acinetobacter calcoaceticus strain ARu19]
ATGGCAGAACAGCAACCACTAGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGCT
TAACCGATTTAAACCTACCTGACGGTAGCGGTTTAGAATTAGTTAAACATGTTTCTCAAACTTATTCTCAGACACCAATT
GCAGTTCTAACTGCGTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTAAGTAAACC
TATTAACCAAATTCATTTAGATCAGTTATTAAAAAAAGCGCTAAATCAGCCAAAACCAGAGCATGAGTTTGGTGAAACAA
CGTTGGAGAATGACCTATTAATTGGTCGTTCTCCTCCAATACAAAACTTACGAACAGCTATTAAAAAAATAGCCCGCTCT
CAAGCTCCAGTGTTTGTTACAGGCGAGTCTGGTACAGGTAAAGAGGTTGTTGCTAATCTTATTCACCGCTTGAGTAATCG
CAGCGAAGGTCCGTTTATTGCGATTAACTGTGGAGCAATTCCAACTGAGCTCATGGAAAGTGAACTTTTTGGACATAAAA
AAGGCAGTTTTACTGGAGCTACCCAAGACAAACAAGGCCTTATTTTATCCGCTCATGGCGGCAGCTTATTTTTAGATGAA
ATTGCTGAATTGCCTTTAAGTATGCAAGTCAAATTACTTCGGGCAGTACAAGAGAAAAAAATTCGCCCAGTAGGTTCCGA
TCAGGAAATCGATGTTGATTTTCGGGTGATTAGCGCCAGCCACCAAGATTTAGAGTTATTAGTCCGACAAGGCAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATCATGTTGCCGCCACTGCGTGAGCGCGGTGGAGATATTTTGTTA
TTAGCCAATCATTTTATTCAAAAGGTTTGTATGGAATGGGAAATTCCAAGCAAACAATTAACTACTACTGCTGAAACTTA
TTTATTGCAGCAAGATTTTCCAGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACCTTAAGTGATGATG
AATGTATTGATTTAACACACTTAGCACCTCCTCTCAGGGGCAGTAGCGTTAACTCGCAAATCACAACTAAACAAGTGAAT
GACACATCAACTGCGATTACTCAGACTCGGCCAAAATTACCAATGGAAGGCTTAGAACGCTACTTAGAAAATATTGAAAA
AGATATTCTACTGAACGCGTTGGACATGACACATTGGAACCGGACCTTAGCAGCTAAAAAGTTAGGAATGACCTTCCGTT
CTTTACGCTATCGACTCAAAAAGTTTGGCTTAGATACCGAATTAGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.681

100

0.869
  pilR Pseudomonas aeruginosa PAK

50.759

97.669

0.496