Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LRO84_RS17385 Genome accession   NZ_CP088955
Coordinates   3669044..3670612 (+) Length   522 a.a.
NCBI ID   WP_231762080.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3664044..3675612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS17365 (LRO84_17365) - 3664535..3665836 (+) 1302 WP_004640662.1 homoserine dehydrogenase -
  LRO84_RS17370 (LRO84_17370) thrC 3665891..3667030 (+) 1140 WP_003654438.1 threonine synthase -
  LRO84_RS17375 (LRO84_17375) pbpG 3667140..3668186 (-) 1047 WP_231762079.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  LRO84_RS17380 (LRO84_17380) - 3668399..3669034 (+) 636 WP_003654436.1 response regulator -
  LRO84_RS17385 (LRO84_17385) pilS 3669044..3670612 (+) 1569 WP_231762080.1 sensor histidine kinase Regulator
  LRO84_RS17390 (LRO84_17390) pilR 3670637..3672055 (+) 1419 WP_231762081.1 sigma-54-dependent transcriptional regulator Regulator
  LRO84_RS17395 (LRO84_17395) - 3672060..3673244 (-) 1185 WP_231762082.1 S41 family peptidase -
  LRO84_RS17400 (LRO84_17400) gpmI 3673260..3674807 (-) 1548 WP_231762083.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59097.60 Da        Isoelectric Point: 6.2306

>NTDB_id=634225 LRO84_RS17385 WP_231762080.1 3669044..3670612(+) (pilS) [Acinetobacter calcoaceticus strain ARu19]
MQFPLNSSLSNTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSILSLLQLLCFKFVATQATKQ
LILFFVVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHPDLFEILKFDNLQEGDRFIFESRLSAYSINIKVQHLVVPQQALTLLTLQDAQHINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELFKDSDLEQQNTLRRMIGKQTKRIDSIVQDTLGLASSERTHPIEIELNDFIKTLLDEDLSDVK
HSIQLKISDSFLKLLFDEKQLRQVLINLIRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRMACPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=634225 LRO84_RS17385 WP_231762080.1 3669044..3670612(+) (pilS) [Acinetobacter calcoaceticus strain ARu19]
ATGCAATTTCCCTTAAACTCATCGTTGTCCAATACGATTTTTCGTTTGGGCACGTGGTATGGTTTATATCGTCTTATTAT
TGCGGTTAGCCTCAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ACACATTGCTTGGCTATTCCATATTAAGCCTTCTTCAGCTTTTGTGTTTTAAGTTTGTTGCAACTCAGGCAACAAAGCAG
CTTATTTTATTTTTTGTAGTTGATGTTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTACAACTCAG
CTTGCTGTATGTTATTGCTATATTCACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTACTCATTACATTACTTGCAG
TCATTGCTGTTATTTACCAACGTTTTGTCGGTAGTTTATTTGACTACAATAATCTAAATACAATTGGTAATAGTGCCTTA
TTAGCCTTCTTATTTTTTGTGGTGCATGGGATCGGACAAATTGCGGTTCAGCGCTTTAAATTACTTGAAGCACTTACCTT
CCACCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATTCTGGAACAAATTGAAGAAGGCTATCTTGTTC
TAGATGAAAACTATGACATTGTTCTAAGTAATCCGGCTGCCTGCTCTCTGTTAGGCATTCCGCCACAATTTGCCAGTGAA
AAATATCCTTTAGCGAAATGGCACCCCGATTTATTTGAAATTCTTAAGTTTGATAACCTACAAGAAGGTGATCGATTTAT
TTTTGAGTCTCGGCTGTCGGCTTACTCTATTAACATTAAAGTGCAGCATCTTGTGGTGCCGCAACAAGCATTGACGCTGC
TCACTTTACAAGATGCACAACACATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGGCAACTTTCAGCCAGT
ATTGCACATGAAATCCGTAATCCTCTAGCAGCAATTGTTCAAGCAAATGAATTATTTAAAGATAGTGATTTAGAGCAGCA
AAATACTTTACGCCGCATGATTGGCAAGCAAACAAAACGCATCGATAGTATTGTTCAAGACACCTTAGGTCTTGCCAGTA
GTGAAAGAACCCACCCAATCGAGATTGAATTAAATGACTTCATAAAGACATTATTAGATGAAGATCTATCGGATGTTAAA
CATTCTATACAACTTAAAATTTCTGATTCATTCTTAAAATTATTATTTGACGAGAAACAACTCAGACAAGTGCTGATTAA
CCTTATCAGGAATGCTTTACGACATAATGCACCTGATTCCCCCTATGTTCTGATCAACATTCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACATATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATGGCATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

92.337

100

0.923