Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LRO84_RS15600 Genome accession   NZ_CP088955
Coordinates   3299086..3299490 (-) Length   134 a.a.
NCBI ID   WP_231761911.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3294086..3304490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS15570 (LRO84_15570) - 3294169..3294438 (-) 270 WP_013198928.1 HPr family phosphocarrier protein -
  LRO84_RS15575 (LRO84_15575) rapZ 3294435..3295286 (-) 852 WP_003655028.1 RNase adapter RapZ -
  LRO84_RS15580 (LRO84_15580) panC 3295310..3296158 (-) 849 WP_231761907.1 pantoate--beta-alanine ligase -
  LRO84_RS15585 (LRO84_15585) panB 3296162..3296971 (-) 810 WP_231761908.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LRO84_RS15590 (LRO84_15590) folK 3297018..3297500 (-) 483 WP_231761909.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LRO84_RS15595 (LRO84_15595) pcnB 3297497..3298960 (-) 1464 WP_231761910.1 polynucleotide adenylyltransferase PcnB -
  LRO84_RS15600 (LRO84_15600) comEA 3299086..3299490 (-) 405 WP_231761911.1 ComEA family DNA-binding protein Machinery gene
  LRO84_RS15605 (LRO84_15605) mazG 3299459..3300265 (-) 807 WP_231761912.1 nucleoside triphosphate pyrophosphohydrolase -
  LRO84_RS15610 (LRO84_15610) - 3300378..3301151 (+) 774 WP_231761913.1 SDR family oxidoreductase -
  LRO84_RS15615 (LRO84_15615) - 3301200..3303506 (-) 2307 WP_231761914.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15370.60 Da        Isoelectric Point: 10.5404

>NTDB_id=634215 LRO84_RS15600 WP_231761911.1 3299086..3299490(-) (comEA) [Acinetobacter calcoaceticus strain ARu19]
MQLSMNLWKSKYYIFIVLFWSLISSTLIQAQSFDQNFKEWKAKQQMYDQKLSTQHSSHSNAPKSSTRTDSLGQVHLNQAN
VDELQKLKGIGGKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLSL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=634215 LRO84_RS15600 WP_231761911.1 3299086..3299490(-) (comEA) [Acinetobacter calcoaceticus strain ARu19]
ATGCAGCTCAGCATGAATCTTTGGAAGAGTAAGTATTATATTTTTATTGTTTTATTTTGGAGCCTGATTTCATCGACATT
GATTCAGGCCCAATCTTTCGATCAAAATTTTAAGGAGTGGAAAGCTAAACAGCAGATGTATGATCAGAAGTTAAGCACGC
AGCATTCCTCTCATTCTAATGCCCCAAAAAGTTCAACAAGGACTGATTCTTTAGGGCAAGTTCACTTGAATCAAGCCAAT
GTTGATGAGCTTCAAAAGCTAAAAGGGATTGGTGGGAAAAAGGCTCAGGCGATTGTAGAATACCGTCAAAAGAATGGTGG
TTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGGCCAGCCATTTTTGAAAAGAATAAAACACGATTGAGTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(73-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

67.883

100

0.694
  comEA Acinetobacter baylyi ADP1

41.129

92.537

0.381