Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LRO55_RS17390 Genome accession   NZ_CP088954
Coordinates   3686481..3687899 (+) Length   472 a.a.
NCBI ID   WP_231764221.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3681481..3692899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS17370 (LRO55_17370) thrC 3681730..3682869 (+) 1140 WP_003654438.1 threonine synthase -
  LRO55_RS17375 (LRO55_17375) pbpG 3682983..3684029 (-) 1047 WP_003654437.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  LRO55_RS17380 (LRO55_17380) - 3684242..3684877 (+) 636 WP_003654436.1 response regulator -
  LRO55_RS17385 (LRO55_17385) pilS 3684888..3686456 (+) 1569 WP_231764220.1 sensor histidine kinase Regulator
  LRO55_RS17390 (LRO55_17390) pilR 3686481..3687899 (+) 1419 WP_231764221.1 sigma-54-dependent transcriptional regulator Regulator
  LRO55_RS17395 (LRO55_17395) - 3687904..3689088 (-) 1185 WP_017387760.1 S41 family peptidase -
  LRO55_RS17400 (LRO55_17400) gpmI 3689104..3690651 (-) 1548 WP_003654432.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LRO55_RS17405 (LRO55_17405) lptG 3690778..3691848 (-) 1071 WP_017391149.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 52978.15 Da        Isoelectric Point: 6.2782

>NTDB_id=634179 LRO55_RS17390 WP_231764221.1 3686481..3687899(+) (pilR) [Acinetobacter calcoaceticus strain ACa13]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLEFLVRQGKFRQDLFFRIHVMDIMLPPLRERGGDILL
LANHFIQKVCMEWEIPSKQLTTTAETYLLQQDFPGNVRELRNMIERAITLSDDECIDLTHLAPPLRGSSVNSQITTKPVN
DTSTAIAQTRPKLPMEGLERYLENIEKDILLNALDMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTELGEEV

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=634179 LRO55_RS17390 WP_231764221.1 3686481..3687899(+) (pilR) [Acinetobacter calcoaceticus strain ACa13]
ATGGCAGAACAGCAACCACTAGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGCT
TAACCGATTTAAACCTACCTGACGGTAGCGGTTTAGAATTAGTTAAACATGTTTCTCAAACTTACCCACACACACCAATT
GCAGTTCTAACTGCGTACGGCAATATGGATATTGCAATTGCAGCGTTAAAAGCAGGAGCTTTTGACTTTGTAAGTAAACC
TATTAACCAAATTCATTTAGATCAGTTATTAAAAAAAGCGCTAAATCAGCCAAAACCAGAGCATGAGTTCGGTGAAACAA
CGTTGGAGAATGACCTATTAATTGGACGTTCTCCCCCAATACAAAACTTACGAACAGCTATTAAAAAAATAGCTCGTTCT
CAAGCTCCTGTGTTTGTTACAGGCGAGTCTGGTACAGGTAAAGAAGTTGTTGCTAATCTTATTCACCGTTTGAGTAACCG
CAGCGAAGGTCCATTTATTGCGATTAACTGTGGAGCAATTCCAACCGAGCTCATGGAAAGTGAACTTTTTGGACATAAAA
AAGGCAGTTTTACTGGAGCTACCCAAGACAAACAAGGCCTTATTTTATCCGCTCATGGCGGCAGCTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTCAAATTACTTCGGGCAGTACAAGAGAAAAAAATTCGTCCAGTAGGTTCAGA
TCAGGAAATCGATGTTGATTTTCGGGTGATCAGCGCCAGCCACCAAGATTTAGAATTTTTAGTCCGACAAGGTAAATTCC
GTCAGGATTTATTTTTCCGTATTCATGTTATGGATATCATGTTGCCGCCACTGCGTGAGCGCGGTGGAGATATTTTGTTA
TTAGCCAATCATTTTATTCAAAAGGTTTGTATGGAATGGGAAATTCCAAGCAAACAATTAACCACTACTGCTGAAACTTA
TTTATTGCAGCAAGATTTTCCAGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACCTTAAGTGATGATG
AATGTATTGATTTAACACATTTAGCACCTCCTCTCAGAGGCAGTAGCGTTAACTCGCAAATCACAACTAAACCAGTGAAT
GACACATCAACTGCGATTGCTCAGACTCGACCAAAATTACCAATGGAAGGCTTAGAACGCTACTTAGAAAATATTGAAAA
AGATATTCTACTGAACGCGTTGGACATGACACATTGGAACAGGACCTTAGCAGCTAAGAAGTTAGGAATGACCTTCCGTT
CTTTACGCTATCGATTGAAAAAGTTTGGCTTAGATACTGAATTAGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.469

100

0.867
  pilR Pseudomonas aeruginosa PAK

50.759

97.669

0.496