Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LRO55_RS17385 Genome accession   NZ_CP088954
Coordinates   3684888..3686456 (+) Length   522 a.a.
NCBI ID   WP_231764220.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3679888..3691456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS17365 (LRO55_17365) - 3680374..3681675 (+) 1302 WP_004640662.1 homoserine dehydrogenase -
  LRO55_RS17370 (LRO55_17370) thrC 3681730..3682869 (+) 1140 WP_003654438.1 threonine synthase -
  LRO55_RS17375 (LRO55_17375) pbpG 3682983..3684029 (-) 1047 WP_003654437.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  LRO55_RS17380 (LRO55_17380) - 3684242..3684877 (+) 636 WP_003654436.1 response regulator -
  LRO55_RS17385 (LRO55_17385) pilS 3684888..3686456 (+) 1569 WP_231764220.1 sensor histidine kinase Regulator
  LRO55_RS17390 (LRO55_17390) pilR 3686481..3687899 (+) 1419 WP_231764221.1 sigma-54-dependent transcriptional regulator Regulator
  LRO55_RS17395 (LRO55_17395) - 3687904..3689088 (-) 1185 WP_017387760.1 S41 family peptidase -
  LRO55_RS17400 (LRO55_17400) gpmI 3689104..3690651 (-) 1548 WP_003654432.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59014.56 Da        Isoelectric Point: 6.3664

>NTDB_id=634178 LRO55_RS17385 WP_231764220.1 3684888..3686456(+) (pilS) [Acinetobacter calcoaceticus strain ACa13]
MQFPLNSSLSNTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSILSLLQLLCFKFIATQATKQ
LILFFVVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHPDLFEILKFDNLQEGDRFIFESRLSAYSINIKVQHLVVPQQALTLLILQDAQHINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRRMIGKQTKRIDSIVQDTLGLASSERTHPIQIELNDFIKTLLDEDLSDVK
HSIQLKISDSSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRMACPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=634178 LRO55_RS17385 WP_231764220.1 3684888..3686456(+) (pilS) [Acinetobacter calcoaceticus strain ACa13]
ATGCAATTTCCCTTAAACTCATCGTTGTCCAATACGATTTTTCGTTTGGGCACGTGGTATGGTTTATATCGTCTTATTAT
TGCGGTTAGCCTCAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ACACACTGCTTGGCTATTCCATATTAAGCCTTCTTCAGCTTTTGTGTTTTAAGTTTATTGCAACTCAGGCAACAAAGCAG
CTTATTTTATTTTTTGTAGTTGATGTTATCTGTCTGAGTTTACTTACATTTTCCGTAGGTGAACCAAATTTACAGCTCAG
CTTGCTGTATGTTATTGCTATATTTACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTACTCATTACATTACTTGCGG
TCATTGCCGTTATTTACCAACGTTTTGTCGGTAGTTTATTTGACTACAATAATCTAAATACAATTGGTAATAGTGCCTTA
TTAGCCTTCTTATTTTTTGTGGTGCATGGGATCGGACAAATTGCGGTTCAGCGCTTTAAATTACTTGAAGCACTTACCTT
CCACCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATTCTGGAACAAATTGAAGAAGGCTATCTTGTTC
TAGATGAAAACTATGACATTGTTCTAAGTAATCCAGCTGCCTGCTCTCTGTTAGGCATTCCGCCACAATTTGCCAGTGAA
AAATATCCTTTAGCTAAATGGCACCCCGATTTATTTGAAATTCTTAAGTTTGATAACCTACAAGAAGGTGATCGATTTAT
TTTTGAGTCTCGGCTGTCGGCTTACTCTATTAACATTAAAGTGCAGCATCTTGTGGTGCCGCAACAAGCATTGACGCTGC
TCATTTTACAAGATGCACAACACATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGGCAACTTTCAGCCAGT
ATCGCACATGAAATCCGTAATCCTCTGGCAGCAATTGTTCAAGCAAATGAATTACTTAAAGATAGTGATTTAGAGCAGCA
AAATACTTTACGCCGTATGATTGGCAAGCAAACAAAACGCATCGATAGTATTGTTCAAGACACCTTAGGACTTGCCAGCA
GCGAAAGAACTCATCCAATCCAGATTGAATTAAATGACTTCATAAAGACGTTATTAGACGAAGATCTATCGGATGTTAAA
CATTCTATACAGCTTAAAATCTCTGATTCATCCTTAAAATTATTATTTGACGAGAAACAACTCAGACAAGTGCTGATTAA
CCTTGTCAGGAATGCTTTACGACATAATGCACCTGATTCCCCCTATGTTCTGATCAACATTCACTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGCGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACGTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATGGCATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-516)

PAS fold (PAS)

(203-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

93.487

100

0.935