Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LRO55_RS15635 Genome accession   NZ_CP088954
Coordinates   3315578..3315982 (-) Length   134 a.a.
NCBI ID   WP_231764076.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3310578..3320982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS15605 (LRO55_15605) - 3310661..3310930 (-) 270 WP_013198928.1 HPr family phosphocarrier protein -
  LRO55_RS15610 (LRO55_15610) rapZ 3310927..3311778 (-) 852 WP_003655028.1 RNase adapter RapZ -
  LRO55_RS15615 (LRO55_15615) panC 3311802..3312650 (-) 849 WP_005036795.1 pantoate--beta-alanine ligase -
  LRO55_RS15620 (LRO55_15620) panB 3312654..3313463 (-) 810 WP_003655024.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LRO55_RS15625 (LRO55_15625) folK 3313510..3313992 (-) 483 WP_003655023.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LRO55_RS15630 (LRO55_15630) pcnB 3313989..3315452 (-) 1464 WP_231764075.1 polynucleotide adenylyltransferase PcnB -
  LRO55_RS15635 (LRO55_15635) comEA 3315578..3315982 (-) 405 WP_231764076.1 ComEA family DNA-binding protein Machinery gene
  LRO55_RS15640 (LRO55_15640) mazG 3315951..3316757 (-) 807 WP_231764077.1 nucleoside triphosphate pyrophosphohydrolase -
  LRO55_RS15645 (LRO55_15645) - 3316870..3317643 (+) 774 WP_231764078.1 SDR family oxidoreductase -
  LRO55_RS15650 (LRO55_15650) - 3317691..3319997 (-) 2307 WP_003655013.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15383.52 Da        Isoelectric Point: 10.5146

>NTDB_id=634168 LRO55_RS15635 WP_231764076.1 3315578..3315982(-) (comEA) [Acinetobacter calcoaceticus strain ACa13]
MHLSMNLWKSKSYIFIILFWSLISSSFVQAQSFDQNFKEWKAKQQMYDQKLSTQHSSHSNAPKSSTRTDSSGQVHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLSL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=634168 LRO55_RS15635 WP_231764076.1 3315578..3315982(-) (comEA) [Acinetobacter calcoaceticus strain ACa13]
ATGCATCTCAGCATGAATCTTTGGAAGAGTAAGTCTTATATTTTTATTATTTTATTTTGGAGCCTGATTTCTTCAAGCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAAGCTAAACAGCAGATGTATGATCAGAAGTTAAGTACGC
AACACTCATCTCACTCTAATGCCCCAAAAAGTTCAACAAGGACTGATTCTTCAGGGCAGGTGCACTTGAATCAAGCCAAT
ATTGATGAGCTTCAAAAGCTAAAAGGGATTGGTGAGAAAAAGGCTCAGGCGATTGTAGAATACCGCCAAAAGAATGGTGG
TTTTAAGAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGGTTGAGTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

67.883

100

0.694
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396