Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LRO55_RS03310 Genome accession   NZ_CP088954
Coordinates   674286..674669 (+) Length   127 a.a.
NCBI ID   WP_000389061.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 669286..679669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS03300 (LRO55_03300) - 672184..673293 (-) 1110 WP_231765279.1 efflux RND transporter periplasmic adaptor subunit -
  LRO55_RS03305 (LRO55_03305) - 673362..674000 (-) 639 WP_231764638.1 hypothetical protein -
  LRO55_RS03310 (LRO55_03310) pilG 674286..674669 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  LRO55_RS03315 (LRO55_03315) - 674693..675055 (+) 363 WP_005036319.1 response regulator -
  LRO55_RS03320 (LRO55_03320) - 675115..675651 (+) 537 WP_005309806.1 chemotaxis protein CheW -
  LRO55_RS03325 (LRO55_03325) - 675694..677775 (+) 2082 WP_017392491.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14200.23 Da        Isoelectric Point: 4.5762

>NTDB_id=634155 LRO55_RS03310 WP_000389061.1 674286..674669(+) (pilG) [Acinetobacter calcoaceticus strain ACa13]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=634155 LRO55_RS03310 WP_000389061.1 674286..674669(+) (pilG) [Acinetobacter calcoaceticus strain ACa13]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTAATTGATGACTCAAAAACCATTCGCCGTACAGCCGAAACTTTATT
ACAGCGAGAAGGCTGTGAAGTGATTACTGCGGTGGATGGATTTGAAGCTTTGTCCAAAATTGCAGAAGCAAATCCAGATA
TTGTTTTTGTCGATATCATGATGCCTCGTTTAGATGGTTATCAAACTTGCGCTTTGATTAAAAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTATTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGTTAAACGCGATTCGTAATCACGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

100

100

1
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37