Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LRO55_RS01660 Genome accession   NZ_CP088954
Coordinates   351544..352044 (+) Length   166 a.a.
NCBI ID   WP_231764499.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346544..357044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS01650 (LRO55_01650) - 347077..347823 (+) 747 WP_231764497.1 PilX N-terminal domain-containing pilus assembly protein -
  LRO55_RS01655 (LRO55_01655) - 347848..351534 (+) 3687 WP_231764498.1 PilC/PilY family type IV pilus protein -
  LRO55_RS01660 (LRO55_01660) comE 351544..352044 (+) 501 WP_231764499.1 type IV pilin protein Machinery gene
  LRO55_RS01665 (LRO55_01665) comF 352028..352477 (+) 450 WP_231764500.1 type IV pilin protein Machinery gene
  LRO55_RS01670 (LRO55_01670) rpsP 352624..352875 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  LRO55_RS01675 (LRO55_01675) rimM 352897..353445 (+) 549 WP_003653772.1 ribosome maturation factor RimM -
  LRO55_RS01680 (LRO55_01680) trmD 353488..354243 (+) 756 WP_231764501.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LRO55_RS01685 (LRO55_01685) rplS 354463..354831 (+) 369 WP_003653770.1 50S ribosomal protein L19 -
  LRO55_RS01690 (LRO55_01690) - 354885..355826 (-) 942 WP_231765274.1 lipase family alpha/beta hydrolase -
  LRO55_RS01695 (LRO55_01695) - 355944..356975 (-) 1032 WP_231764502.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18237.00 Da        Isoelectric Point: 9.2223

>NTDB_id=634150 LRO55_RS01660 WP_231764499.1 351544..352044(+) (comE) [Acinetobacter calcoaceticus strain ACa13]
MKKNMGFTLIELMVVVMIIAVFAAIAIPSYQAQIRRADTAAVQQELLKLAGQLERYKSQNFSYHGFDPKYLYGQTLAMSS
VDFPSSTNKKYTITLVDISETGRTTLLASSAGLGQRWAISAIPETTGYDALLVTSTGIKCKSKYLVANDLTNINNYTGCA
TNAEKW

Nucleotide


Download         Length: 501 bp        

>NTDB_id=634150 LRO55_RS01660 WP_231764499.1 351544..352044(+) (comE) [Acinetobacter calcoaceticus strain ACa13]
ATGAAAAAAAATATGGGATTTACCCTGATTGAGCTAATGGTTGTCGTCATGATTATCGCTGTTTTTGCAGCAATTGCGAT
TCCATCTTATCAAGCCCAAATTCGTCGTGCAGATACCGCAGCAGTACAGCAGGAATTGTTAAAACTTGCTGGACAATTAG
AAAGATATAAAAGCCAGAATTTTTCTTATCATGGTTTTGATCCTAAATACTTATATGGACAAACCTTAGCAATGAGTAGT
GTAGATTTTCCAAGCAGTACCAATAAAAAGTACACGATTACTCTAGTCGATATTAGTGAAACAGGACGCACTACTTTATT
AGCGAGTAGTGCTGGATTAGGCCAAAGATGGGCTATTAGCGCAATACCAGAAACGACTGGGTATGATGCGCTGTTAGTTA
CCAGTACAGGGATTAAATGTAAATCTAAGTATTTGGTGGCAAATGATCTAACTAATATCAACAATTACACAGGGTGTGCT
ACAAATGCTGAAAAATGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-102)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

50.877

100

0.524
  pilY2 Acinetobacter baumannii D1279779

38.095

100

0.386