Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LRO55_RS01665 Genome accession   NZ_CP088954
Coordinates   352028..352477 (+) Length   149 a.a.
NCBI ID   WP_231764500.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347028..357477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS01650 (LRO55_01650) - 347077..347823 (+) 747 WP_231764497.1 PilX N-terminal domain-containing pilus assembly protein -
  LRO55_RS01655 (LRO55_01655) - 347848..351534 (+) 3687 WP_231764498.1 PilC/PilY family type IV pilus protein -
  LRO55_RS01660 (LRO55_01660) comE 351544..352044 (+) 501 WP_231764499.1 type IV pilin protein Machinery gene
  LRO55_RS01665 (LRO55_01665) comF 352028..352477 (+) 450 WP_231764500.1 type IV pilin protein Machinery gene
  LRO55_RS01670 (LRO55_01670) rpsP 352624..352875 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  LRO55_RS01675 (LRO55_01675) rimM 352897..353445 (+) 549 WP_003653772.1 ribosome maturation factor RimM -
  LRO55_RS01680 (LRO55_01680) trmD 353488..354243 (+) 756 WP_231764501.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LRO55_RS01685 (LRO55_01685) rplS 354463..354831 (+) 369 WP_003653770.1 50S ribosomal protein L19 -
  LRO55_RS01690 (LRO55_01690) - 354885..355826 (-) 942 WP_231765274.1 lipase family alpha/beta hydrolase -
  LRO55_RS01695 (LRO55_01695) - 355944..356975 (-) 1032 WP_231764502.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16554.73 Da        Isoelectric Point: 8.9659

>NTDB_id=634151 LRO55_RS01665 WP_231764500.1 352028..352477(+) (comF) [Acinetobacter calcoaceticus strain ACa13]
MLKNGRHQGFTLIELMIVVAIIAILAAIAYPSYTQYKIRTNRTDVQAEMLRINQRLQSYKVVNHSFNNATLDNGTALQSY
PLTGTAFYTVTLAIDADNQGYLLKATPIIASIQNGNGEVCVNQDQQRHWSKGSTCSLTNLSNTSNWDGR

Nucleotide


Download         Length: 450 bp        

>NTDB_id=634151 LRO55_RS01665 WP_231764500.1 352028..352477(+) (comF) [Acinetobacter calcoaceticus strain ACa13]
ATGCTGAAAAATGGTAGACATCAAGGATTTACCTTAATTGAGCTGATGATTGTGGTGGCGATCATTGCAATTTTGGCAGC
AATTGCTTATCCGTCTTATACCCAATATAAAATTCGTACTAACCGTACTGATGTACAAGCTGAGATGCTGCGTATTAATC
AACGATTACAAAGCTATAAAGTGGTTAATCATAGTTTTAATAATGCTACTTTAGATAATGGTACAGCATTACAAAGTTAT
CCTTTAACAGGAACTGCTTTTTATACTGTAACTTTAGCCATTGATGCTGATAATCAGGGATATTTACTCAAAGCCACTCC
AATTATTGCTTCTATACAAAATGGTAATGGCGAGGTCTGCGTAAATCAGGATCAACAGCGCCATTGGTCTAAAGGTTCAA
CCTGCTCATTAACAAACTTGTCAAATACTTCAAATTGGGATGGGCGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-30)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

64.828

97.315

0.631
  pilE Acinetobacter baumannii D1279779

48.571

93.96

0.456