Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LRX86_RS15595 Genome accession   NZ_CP088895
Coordinates   3256951..3257361 (-) Length   136 a.a.
NCBI ID   WP_005112082.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-R21     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3251951..3262361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX86_RS15565 (LRX86_15565) - 3252037..3252306 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  LRX86_RS15570 (LRX86_15570) rapZ 3252303..3253154 (-) 852 WP_000821671.1 RNase adapter RapZ -
  LRX86_RS15575 (LRX86_15575) panC 3253177..3254025 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LRX86_RS15580 (LRX86_15580) panB 3254029..3254838 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LRX86_RS15585 (LRX86_15585) folK 3254884..3255366 (-) 483 WP_000219219.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LRX86_RS15590 (LRX86_15590) pcnB 3255363..3256826 (-) 1464 WP_001194203.1 polynucleotide adenylyltransferase PcnB -
  LRX86_RS15595 (LRX86_15595) comEA 3256951..3257361 (-) 411 WP_005112082.1 ComEA family DNA-binding protein Machinery gene
  LRX86_RS15600 (LRX86_15600) mazG 3257330..3258136 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  LRX86_RS15605 (LRX86_15605) - 3258248..3259021 (+) 774 WP_000682844.1 SDR family oxidoreductase -
  LRX86_RS15610 (LRX86_15610) - 3259066..3261372 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15654.94 Da        Isoelectric Point: 10.4475

>NTDB_id=633815 LRX86_RS15595 WP_005112082.1 3256951..3257361(-) (comEA) [Acinetobacter baumannii strain DETAB-R21]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=633815 LRX86_RS15595 WP_005112082.1 3256951..3257361(-) (comEA) [Acinetobacter baumannii strain DETAB-R21]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404