Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   LRX86_RS04625 Genome accession   NZ_CP088895
Coordinates   977666..980098 (+) Length   810 a.a.
NCBI ID   WP_000472711.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-R21     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 972637..992308 977666..980098 within 0


Gene organization within MGE regions


Location: 972637..992308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX86_RS04595 (LRX86_04595) - 972637..972783 (-) 147 WP_000691794.1 hypothetical protein -
  LRX86_RS04600 (LRX86_04600) - 972817..973758 (-) 942 WP_000795868.1 hypothetical protein -
  LRX86_RS04605 (LRX86_04605) - 974015..974500 (+) 486 WP_001985538.1 YaiI/YqxD family protein -
  LRX86_RS04610 (LRX86_04610) - 974511..975419 (+) 909 WP_096877290.1 EamA family transporter -
  LRX86_RS18595 - 975449..975647 (-) 199 Protein_881 hypothetical protein -
  LRX86_RS04615 (LRX86_04615) - 975667..976902 (+) 1236 WP_001984636.1 lipoprotein-releasing ABC transporter permease subunit -
  LRX86_RS04620 (LRX86_04620) lolD 976895..977581 (+) 687 WP_000049406.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  LRX86_RS04625 (LRX86_04625) comA/comEC 977666..980098 (+) 2433 WP_000472711.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LRX86_RS04630 (LRX86_04630) - 980051..981034 (-) 984 WP_001984639.1 lysophospholipid acyltransferase family protein -
  LRX86_RS04635 (LRX86_04635) sppA 981171..982187 (+) 1017 WP_001286613.1 signal peptide peptidase SppA -
  LRX86_RS04640 (LRX86_04640) - 982206..983015 (+) 810 WP_000114070.1 alpha/beta hydrolase -
  LRX86_RS04645 (LRX86_04645) purN 983079..983708 (-) 630 WP_000975530.1 phosphoribosylglycinamide formyltransferase -
  LRX86_RS04650 (LRX86_04650) purM 983705..984775 (-) 1071 WP_000071984.1 phosphoribosylformylglycinamidine cyclo-ligase -
  LRX86_RS04655 (LRX86_04655) cxpE 984911..986104 (+) 1194 WP_001153980.1 chloramphenicol efflux transporter CxpE -
  LRX86_RS04660 (LRX86_04660) hda 986125..986823 (+) 699 WP_001249536.1 DnaA regulatory inactivator Hda -
  LRX86_RS04665 (LRX86_04665) rbtA 987140..988993 (+) 1854 WP_000920004.1 rhombotarget A -
  LRX86_RS04670 (LRX86_04670) - 989009..990394 (+) 1386 Protein_893 CSLREA domain-containing protein -
  LRX86_RS04675 (LRX86_04675) - 990507..991289 (+) 783 Protein_894 IS30-like element ISAba125 family transposase -
  LRX86_RS04680 (LRX86_04680) - 991298..992266 (-) 969 WP_014538385.1 IS30 family transposase -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 92426.66 Da        Isoelectric Point: 8.5366

>NTDB_id=633803 LRX86_RS04625 WP_000472711.1 977666..980098(+) (comA/comEC) [Acinetobacter baumannii strain DETAB-R21]
MFKIILLGWIGGIALMGIDFPLIMQYEKVGEALLLLAFIFYLYKRPMFVDRPFLKAVFCLLCTTSLFMVGYHYAEKALIE
RLEQRETDTRNLDIIVYINRLSEEKDNKVQQTAQVLNLSKEPVNWLLYLKSNNQNLLKNNQNLELGHYYRISGKTRPAHS
YATPGAFDQEKWFIQRNIMSGFNVRYIEPLSLDEIYRLGYQQHLKEQQSFSNSFRLNIEKLRLTFRQILNSSSLQQKGLI
LALLTGDESLLSDETQLQFKQLGISHLLAISGPHVLIFAIMLSWACHQFISRYYPQIYLWKPKQVLMAVPCCLGVLIYTA
FVGFEIPALRTLLSTLIFIGFLLLKQPIKPFTLLVYSASLLLLIDPFSVLSAGFWLSYGACFILLRIYQTIAQLPEQHFL
SLSSKMIFMSKVLIESQGKIFIALSPLTLLFFQQISWVAPLTNIIAVPIVGGVIVPLNIIAACAWFVVKPFGNMLFHFND
MLLSILLSCLGLLEKLSLPLQGISLTPLSLLAISFAIIILFLPKGILPKTWGILCCLPLVIMNKTSQQIQLNILDVGQGQ
AIFLQHSEQNWLIDTGGSYDEKIFSIGQNVVVPFLRQQGVRQLDHVVLSHLDQDHSGAFPLIQQEIPVKQLISNEQLPND
LKQPFQYCHQGQQWHYPELDIQILWPKEKDLAFVTSNQNQYSCVVYLQFKKVGGYQNFLIMGDAGWEAEYELLKDYPNLK
IDVLVLGHHGSKHSSAYDFLATLKPKLAIASAGFDNRYGHPSQEVIARLKALHIPLKSTVEQGTLSFVLENHKIVLHDRR
LDRLWLSRGF

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=633803 LRX86_RS04625 WP_000472711.1 977666..980098(+) (comA/comEC) [Acinetobacter baumannii strain DETAB-R21]
ATGTTTAAGATTATTCTATTGGGGTGGATTGGCGGTATTGCATTGATGGGAATAGATTTCCCTTTAATCATGCAATATGA
AAAAGTGGGCGAGGCTCTACTGTTACTTGCCTTTATTTTTTATCTTTATAAACGACCAATGTTCGTTGATCGACCATTTT
TAAAGGCAGTGTTTTGCTTATTATGTACAACAAGTCTTTTTATGGTTGGCTACCACTATGCTGAAAAAGCACTGATTGAA
CGATTAGAACAAAGAGAAACAGATACCCGAAATCTCGACATTATTGTCTATATAAACCGTTTAAGTGAAGAAAAAGATAA
TAAGGTTCAACAAACTGCACAAGTTTTAAATCTTTCTAAAGAACCGGTAAATTGGCTGCTATATTTAAAAAGTAATAATC
AAAATTTATTAAAGAATAATCAGAATCTTGAATTAGGTCACTATTATCGAATATCTGGAAAAACAAGGCCTGCGCATAGT
TATGCCACCCCAGGAGCTTTTGATCAGGAAAAGTGGTTTATTCAGCGAAATATTATGTCTGGTTTTAACGTGAGATATAT
TGAGCCTTTAAGTCTCGATGAAATCTATCGATTGGGCTATCAGCAACATTTAAAAGAACAACAGTCTTTTTCCAATAGTT
TTCGTTTAAATATAGAAAAACTTCGCTTAACTTTTAGGCAAATATTAAACAGCTCATCTTTACAGCAAAAGGGTTTAATT
TTAGCTTTGCTGACAGGTGATGAAAGCCTTTTATCAGATGAAACTCAACTACAGTTCAAACAATTAGGAATTAGTCATTT
ATTGGCGATCTCAGGCCCACATGTGCTCATTTTTGCCATTATGTTATCTTGGGCATGTCATCAATTTATCAGTCGTTATT
ATCCTCAAATTTACTTATGGAAACCGAAACAGGTTTTGATGGCTGTACCATGCTGCCTTGGTGTTTTAATTTATACTGCA
TTTGTAGGTTTCGAAATTCCTGCACTACGAACATTATTATCAACCCTTATATTTATTGGATTTCTATTATTAAAACAACC
TATTAAACCTTTTACATTACTCGTATATAGCGCAAGTCTACTGTTGCTAATTGACCCGTTTAGTGTGCTTTCTGCAGGTT
TTTGGCTGTCTTATGGGGCATGTTTTATTTTATTAAGAATTTACCAAACTATAGCGCAGCTACCTGAGCAACATTTTTTA
AGTCTGAGCTCAAAAATGATTTTTATGAGTAAGGTGTTAATTGAATCTCAAGGCAAAATATTTATTGCATTGAGTCCCTT
AACCTTACTTTTCTTTCAACAAATTTCTTGGGTTGCTCCATTAACCAATATTATTGCTGTACCTATTGTTGGTGGTGTTA
TTGTCCCTTTAAACATCATAGCTGCTTGCGCATGGTTTGTAGTAAAACCATTTGGAAATATGCTTTTTCATTTCAATGAT
ATGTTGCTCAGCATATTGCTGAGTTGTTTGGGCTTATTAGAAAAACTCTCTTTACCATTACAAGGTATAAGCTTGACGCC
ACTGTCTTTATTAGCGATTAGTTTTGCCATAATTATTTTATTTTTACCTAAAGGAATTCTGCCCAAAACTTGGGGGATAT
TATGTTGTTTACCCTTAGTTATTATGAACAAAACGAGTCAGCAAATTCAGCTTAATATTTTAGATGTTGGACAGGGGCAA
GCCATTTTTTTACAACATTCCGAACAAAACTGGTTAATTGATACAGGCGGTTCTTACGATGAAAAAATATTTAGTATTGG
ACAAAATGTTGTAGTGCCTTTTCTACGTCAGCAAGGCGTAAGACAATTAGATCATGTTGTGCTATCCCATCTTGATCAAG
ACCATAGTGGCGCGTTTCCTCTTATTCAACAAGAGATTCCTGTAAAGCAGCTTATTTCGAATGAACAATTACCAAATGAT
TTAAAGCAACCATTCCAATATTGCCATCAAGGGCAACAATGGCATTATCCTGAGTTAGATATTCAAATTTTATGGCCTAA
AGAAAAAGATCTGGCTTTTGTTACTTCTAACCAGAATCAATATTCTTGTGTTGTATATCTTCAATTTAAAAAAGTTGGTG
GTTACCAAAATTTTCTTATTATGGGCGATGCAGGATGGGAAGCTGAATACGAGTTATTAAAAGATTATCCTAACTTGAAG
ATAGATGTGTTGGTGCTAGGACATCATGGAAGTAAGCACAGTTCGGCTTATGATTTCTTGGCGACCTTAAAACCTAAACT
GGCCATTGCATCGGCAGGTTTTGATAACCGTTATGGCCATCCTAGCCAAGAAGTTATAGCACGTTTAAAAGCTCTGCATA
TTCCGCTAAAAAGCACTGTGGAACAAGGAACCTTAAGTTTTGTGTTGGAAAACCACAAAATAGTTTTACATGACCGACGT
TTGGATAGGCTCTGGTTGAGTAGAGGTTTTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(243-521)

Domain of unknown function (DUF4131) (DUF4131)

(33-188)

Metallo-beta-lactamase superfamily (Lactamase_B)

(555-639)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

98.519

100

0.985
  comA/comEC Acinetobacter baumannii strain A118

97.654

100

0.977
  comA/comEC Acinetobacter baylyi ADP1

50.185

100

0.502