Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   N6G78_RS06180 Genome accession   NZ_CP104855
Coordinates   1191265..1192182 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain TY-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1186265..1197182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS06165 (N6G78_06165) trpS 1186845..1187837 (-) 993 WP_015483084.1 tryptophan--tRNA ligase -
  N6G78_RS06170 (N6G78_06170) oppA 1188581..1190218 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  N6G78_RS06175 (N6G78_06175) oppB 1190326..1191261 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  N6G78_RS06180 (N6G78_06180) amiD 1191265..1192182 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  N6G78_RS06185 (N6G78_06185) oppD 1192187..1193263 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  N6G78_RS06190 (N6G78_06190) oppF 1193265..1194182 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  N6G78_RS06195 (N6G78_06195) yjbB 1194288..1195505 (+) 1218 WP_080030656.1 MFS transporter -
  N6G78_RS06200 (N6G78_06200) yjbC 1195669..1196244 (+) 576 WP_015383352.1 GNAT family N-acetyltransferase -
  N6G78_RS06205 (N6G78_06205) spx 1196425..1196820 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=633753 N6G78_RS06180 WP_003232954.1 1191265..1192182(+) (amiD) [Bacillus subtilis strain TY-1]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=633753 N6G78_RS06180 WP_003232954.1 1191265..1192182(+) (amiD) [Bacillus subtilis strain TY-1]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364