Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PVLB_RS07180 Genome accession   NC_022738
Coordinates   1592967..1595204 (+) Length   745 a.a.
NCBI ID   WP_023379392.1    Uniprot ID   A0AAN0V987
Organism   Pseudomonas sp. VLB120     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1587967..1600204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVLB_RS07160 (PVLB_07070) - 1589844..1590467 (+) 624 WP_023379388.1 glutathione S-transferase -
  PVLB_RS07165 (PVLB_07075) - 1590600..1591532 (+) 933 WP_023379389.1 ABC transporter ATP-binding protein -
  PVLB_RS07170 (PVLB_07080) - 1591529..1592308 (+) 780 WP_023379390.1 ABC transporter permease -
  PVLB_RS07175 (PVLB_07085) - 1592318..1592824 (-) 507 Protein_1416 DUF2062 domain-containing protein -
  PVLB_RS07180 (PVLB_07090) comA 1592967..1595204 (+) 2238 WP_023379392.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PVLB_RS07185 (PVLB_07095) exbB 1595331..1595966 (+) 636 WP_023379394.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PVLB_RS07190 (PVLB_07100) - 1595963..1596397 (+) 435 WP_023379395.1 ExbD/TolR family protein -
  PVLB_RS07195 (PVLB_07105) lpxK 1596397..1597398 (+) 1002 WP_023379396.1 tetraacyldisaccharide 4'-kinase -
  PVLB_RS07200 (PVLB_07110) - 1597443..1597628 (+) 186 WP_003247142.1 Trm112 family protein -
  PVLB_RS07205 (PVLB_07115) kdsB 1597625..1598389 (+) 765 WP_023379397.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PVLB_RS07210 (PVLB_07120) - 1598389..1598853 (+) 465 WP_023379398.1 low molecular weight protein-tyrosine-phosphatase -
  PVLB_RS07215 (PVLB_07125) murB 1598850..1599869 (+) 1020 WP_023379399.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 80496.49 Da        Isoelectric Point: 10.4487

>NTDB_id=63368 PVLB_RS07180 WP_023379392.1 1592967..1595204(+) (comA) [Pseudomonas sp. VLB120]
MRKGMLALAIGLLCLGFLPALPSVGWLLLLLCCGLGCLCVRWWPVACFLLGVCWACWSAQQALDDRLAPQLDGRTLWLEG
RVVGLPTRTAQGVRFELSQPLSRRAELPTRLQLSWFDGPPLRAGEHWRLAVTLQRPTGLLNPHGPDREASLLARRIGATG
TVKAGEKLSSVAGSWRDQLRQRLLAVQAQGREAALVALVLGDGAALARDDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPHRQPWLPWACGLAMAAALGYGGLAGWGVPVQRACLMLAVVLAWRLRFRHIGSGIPLLLALIAVLLFEPL
AALLPGFWLSFAAVAVLIYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLVATGLPVSLSAPLANLFAVPLISLTVLPLAL
LGTLLLPLGSVGEGLLWLAGGLLELLFWLLGKVAGWRSAWMPAALPLWAWLLVAGGALLVLLPRGVPLRGLGGVMLLALW
VPPEQVPQGQVEVWQLDVGQGLAVLLRTRTHSLLYDAGPARGDSDLGEWVVLPTLRKLGVSRLDVMLISHAHADHAGGAQ
AVARGLPIGRLLAGEAQALSGAQPCVSDERWEWDGVRFSLWRWPEAQGSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AASEQPDIDWLQSPHHGSRTSSTEAFIKATKPRGVLISRGRNNGFGHPHPQVIERYRRHGVVIHDTAVEGALRLRLGHRG
GVEGLRAQRRFWRAAAPSPSSQVPR

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=63368 PVLB_RS07180 WP_023379392.1 1592967..1595204(+) (comA) [Pseudomonas sp. VLB120]
ATGCGCAAAGGGATGCTTGCGCTCGCCATTGGGCTGTTGTGCCTGGGGTTTCTGCCGGCCTTGCCGTCGGTCGGCTGGCT
ATTGCTGTTGCTGTGCTGTGGCTTGGGCTGCCTGTGTGTTCGGTGGTGGCCGGTCGCCTGTTTTCTGCTGGGCGTGTGCT
GGGCCTGCTGGTCGGCCCAGCAGGCCCTGGATGATCGGTTGGCGCCGCAGCTCGATGGCCGTACGTTATGGCTGGAGGGC
AGGGTGGTCGGGTTGCCGACTCGCACCGCGCAAGGCGTGCGTTTTGAGTTGTCGCAGCCACTCTCGCGCCGAGCCGAGTT
ACCGACCCGTCTGCAACTGAGCTGGTTCGACGGTCCGCCGCTGCGCGCGGGCGAACACTGGCGTCTGGCCGTGACCTTGC
AGCGTCCGACAGGCTTGCTCAACCCCCATGGCCCGGACCGCGAGGCAAGCCTGTTGGCCCGACGGATCGGCGCAACCGGC
ACGGTCAAGGCCGGCGAGAAGCTGTCGTCCGTAGCGGGCAGTTGGCGCGACCAACTGCGTCAGCGGCTGCTCGCGGTCCA
GGCACAGGGCCGTGAAGCCGCGCTGGTTGCCTTGGTGTTGGGCGATGGAGCGGCATTGGCCCGGGACGATTGGCAAACCT
TGCAGGCCACGGGCACGGTGCACTTGCTGGTCATCTCCGGGCAACACATCGGTCTGGTGGCCGGCCTGCTGTACGGGTTG
GTCGCCGGGCTGGCGCGCTGGGGGCTCTGGCCTCATCGCCAGCCTTGGCTGCCGTGGGCCTGTGGCCTGGCCATGGCGGC
GGCGCTGGGGTATGGCGGGCTGGCGGGGTGGGGCGTGCCGGTGCAGCGAGCCTGTTTGATGTTGGCCGTGGTACTGGCCT
GGCGCCTGCGCTTCCGCCACATCGGTTCCGGGATACCCTTGCTGTTGGCGCTCATCGCGGTGCTGTTGTTCGAGCCATTG
GCTGCGTTGTTGCCCGGGTTCTGGTTGTCTTTCGCCGCGGTGGCCGTACTCATTTACTGCTTCAGCGCACGTCTGGGTGG
CTGGCGACCCTGGCAAGCCTGGACCCGTGCGCAGTGGGTAATCGCCATTGGCCTGCTGCCAGTGTTGGTCGCCACAGGGC
TGCCGGTCAGCCTGAGTGCGCCCCTGGCCAACCTCTTTGCAGTGCCCTTGATCAGCCTGACGGTGTTGCCGCTGGCGTTG
CTCGGCACGCTGCTGCTGCCATTGGGCAGTGTGGGCGAGGGCTTGCTGTGGCTGGCGGGTGGCTTGTTGGAGCTGCTCTT
CTGGCTTTTGGGCAAGGTGGCGGGTTGGCGTTCTGCCTGGATGCCCGCTGCATTGCCCCTGTGGGCATGGCTGTTGGTGG
CGGGCGGGGCACTGCTGGTGTTGTTGCCCAGAGGCGTGCCACTGCGTGGCTTGGGTGGGGTGATGCTGCTGGCCTTGTGG
GTACCGCCAGAGCAGGTGCCGCAGGGGCAGGTGGAGGTCTGGCAATTGGATGTCGGCCAAGGGTTGGCGGTACTGCTGCG
AACCCGAACCCACAGCCTTCTGTACGATGCAGGGCCAGCACGCGGTGACAGTGACCTGGGTGAATGGGTGGTGCTGCCGA
CCCTGCGCAAGTTGGGAGTAAGCCGTCTGGACGTGATGCTGATCAGCCATGCCCATGCCGACCACGCCGGTGGCGCGCAG
GCTGTGGCGCGCGGGTTGCCCATCGGGCGCCTGCTGGCGGGAGAGGCACAGGCGCTGTCTGGAGCGCAGCCCTGCGTCAG
CGATGAGCGCTGGGAATGGGATGGCGTGCGCTTTTCGCTGTGGCGATGGCCCGAGGCGCAAGGCAGCAATGACCGCTCTT
GCGTGCTACTGGTCGAGGCGCAAGGCGAGCGGCTGCTTTTGGCGGGTGACATGGAGGCGGGTGCCGAGCGTGCCTGGCTG
GCCGCCAGCGAGCAGCCCGACATCGACTGGTTGCAATCGCCCCATCACGGTAGTCGCACGTCGTCCACCGAGGCTTTCAT
CAAGGCCACCAAGCCGCGTGGCGTGTTGATTTCGCGAGGGCGCAACAATGGGTTTGGCCATCCGCACCCGCAGGTGATCG
AACGCTACCGGCGCCATGGCGTGGTGATTCATGATACGGCGGTGGAGGGGGCATTGCGCTTGCGCCTGGGGCATCGCGGT
GGGGTAGAGGGCCTGCGTGCGCAGCGGCGTTTCTGGCGTGCGGCAGCCCCCTCGCCATCCAGCCAGGTACCGCGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.914

96.376

0.568
  comA Ralstonia pseudosolanacearum GMI1000

35.606

100

0.379

Multiple sequence alignment