Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LQ771_RS03820 Genome accession   NZ_CP088252
Coordinates   836773..837216 (-) Length   147 a.a.
NCBI ID   WP_231351054.1    Uniprot ID   -
Organism   Frateuria soli strain 5GH9-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 831773..842216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ771_RS03805 (LQ771_03805) - 831898..833835 (-) 1938 WP_231351051.1 hypothetical protein -
  LQ771_RS03810 (LQ771_03810) - 833874..835868 (-) 1995 WP_231351052.1 tetratricopeptide repeat protein -
  LQ771_RS03815 (LQ771_03815) pilA2 835980..836444 (-) 465 WP_231351053.1 pilin Machinery gene
  LQ771_RS03820 (LQ771_03820) pilE 836773..837216 (-) 444 WP_231351054.1 pilin Machinery gene
  LQ771_RS03825 (LQ771_03825) - 837306..838661 (-) 1356 WP_231351055.1 hypothetical protein -
  LQ771_RS03830 (LQ771_03830) - 838786..840897 (+) 2112 WP_231351056.1 S9 family peptidase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15332.69 Da        Isoelectric Point: 9.7901

>NTDB_id=633544 LQ771_RS03820 WP_231351054.1 836773..837216(-) (pilE) [Frateuria soli strain 5GH9-11]
MRTLRRTSGFTLIELMIVIAIIAILAAIAIPAYQDYVIRAQVSEGLSLSTGPKAAVWDFISNTGRFPPNNTSAGLASAAS
IKGSYVSSVDVTGGKIDVGFQGPKANVQIHSAELVLSPITYAGSIAWTCSGSGTTLPGKYLPASCRR

Nucleotide


Download         Length: 444 bp        

>NTDB_id=633544 LQ771_RS03820 WP_231351054.1 836773..837216(-) (pilE) [Frateuria soli strain 5GH9-11]
ATGCGAACGCTTCGACGTACCAGTGGCTTTACGCTGATCGAGTTGATGATCGTGATTGCGATCATCGCCATCCTTGCTGC
CATCGCGATACCGGCGTACCAGGACTACGTGATTCGTGCCCAGGTGTCCGAAGGACTGAGTTTGTCCACGGGCCCCAAAG
CGGCCGTCTGGGATTTCATTTCCAATACGGGCCGGTTTCCGCCTAACAACACGTCGGCGGGCCTGGCGAGCGCCGCCTCG
ATCAAAGGGAGTTATGTCTCGAGCGTCGATGTCACCGGGGGCAAGATCGACGTGGGCTTCCAAGGTCCCAAGGCCAACGT
CCAGATACACAGCGCCGAGCTCGTCCTGTCGCCGATCACCTATGCCGGCAGCATCGCCTGGACCTGCAGCGGATCCGGGA
CGACCCTGCCGGGCAAGTACCTGCCCGCGTCGTGCCGCCGTTGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)

Pilin (bacterial filament) (Pilin)

(39-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

44.099

100

0.483
  pilE Neisseria gonorrhoeae strain FA1090

43.75

100

0.476
  pilA Ralstonia pseudosolanacearum GMI1000

38.983

100

0.469
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.417

100

0.463
  pilA2 Legionella pneumophila str. Paris

44.056

97.279

0.429
  pilA2 Legionella pneumophila strain ERS1305867

43.357

97.279

0.422
  pilA/pilA1 Eikenella corrodens VA1

40.132

100

0.415
  comP Acinetobacter baylyi ADP1

40.541

100

0.408
  pilA Haemophilus influenzae 86-028NP

42.336

93.197

0.395
  pilA Acinetobacter baumannii strain A118

37.255

100

0.388
  pilA Haemophilus influenzae Rd KW20

39.286

95.238

0.374
  pilA Vibrio cholerae C6706

36.486

100

0.367
  pilA Vibrio cholerae strain A1552

36.486

100

0.367
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

36.486

100

0.367