Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   N6H17_RS19975 Genome accession   NZ_CP104788
Coordinates   4065490..4066080 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain SHP24     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4060490..4071080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6H17_RS19960 (N6H17_19970) uhpT 4061130..4062521 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  N6H17_RS19965 (N6H17_19975) uhpC 4062659..4063978 (-) 1320 WP_000936566.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  N6H17_RS19970 (N6H17_19980) uhpB 4063988..4065490 (-) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  N6H17_RS19975 (N6H17_19985) letA 4065490..4066080 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  N6H17_RS19980 (N6H17_19990) ilvN 4066156..4066446 (-) 291 WP_001181706.1 acetolactate synthase small subunit -
  N6H17_RS19985 (N6H17_19995) ilvB 4066450..4068138 (-) 1689 WP_000168475.1 acetolactate synthase large subunit -
  N6H17_RS19990 (N6H17_20000) ivbL 4068244..4068342 (-) 99 WP_001300753.1 ilvB operon leader peptide IvbL -
  N6H17_RS19995 (N6H17_20005) tisB 4068907..4068996 (+) 90 WP_001054909.1 type I toxin-antitoxin system toxin TisB -
  N6H17_RS20000 (N6H17_20010) ysdE 4069120..4069194 (-) 75 WP_211180519.1 protein YsdE -
  N6H17_RS20005 (N6H17_20015) emrD 4069276..4070460 (+) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  N6H17_RS20010 (N6H17_20020) yidF 4070468..4070965 (-) 498 WP_000148061.1 radical SAM protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=633279 N6H17_RS19975 WP_000633668.1 4065490..4066080(-) (letA) [Escherichia coli strain SHP24]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=633279 N6H17_RS19975 WP_000633668.1 4065490..4066080(-) (letA) [Escherichia coli strain SHP24]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CACGACAGTCCTGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTTTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378