Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   N6H17_RS16720 Genome accession   NZ_CP104788
Coordinates   3393566..3394225 (+) Length   219 a.a.
NCBI ID   WP_001221493.1    Uniprot ID   Q3YXL4
Organism   Escherichia coli strain SHP24     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3388566..3399225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6H17_RS16695 (N6H17_16705) ygiS 3389849..3391456 (-) 1608 WP_001295629.1 ABC transporter substrate-binding protein -
  N6H17_RS16700 (N6H17_16710) mqsA 3391589..3391984 (-) 396 WP_000650107.1 type II toxin-antitoxin system antitoxin MqsA -
  N6H17_RS16705 (N6H17_16715) mqsR 3391986..3392282 (-) 297 Protein_3280 type II toxin-antitoxin system toxin MqsR -
  N6H17_RS16710 (N6H17_16720) ygiV 3392487..3392969 (-) 483 WP_000183505.1 GyrI-like domain-containing protein -
  N6H17_RS16715 (N6H17_16725) ygiW 3393022..3393414 (-) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  N6H17_RS16720 (N6H17_16730) ciaR 3393566..3394225 (+) 660 WP_001221493.1 quorum sensing response regulator transcription factor QseB Regulator
  N6H17_RS16725 (N6H17_16735) qseC 3394222..3395571 (+) 1350 WP_000673402.1 quorum sensing histidine kinase QseC -
  N6H17_RS16730 (N6H17_16740) ygiZ 3395617..3395949 (-) 333 WP_000917684.1 DUF2645 family protein -
  N6H17_RS16735 (N6H17_16745) mdaB 3396268..3396849 (+) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  N6H17_RS16740 (N6H17_16750) ygiN 3396880..3397194 (+) 315 WP_000958598.1 putative quinol monooxygenase -
  N6H17_RS16745 (N6H17_16755) parE 3397242..3399134 (-) 1893 WP_000195296.1 DNA topoisomerase IV subunit B -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24687.63 Da        Isoelectric Point: 6.9850

>NTDB_id=633266 N6H17_RS16720 WP_001221493.1 3393566..3394225(+) (ciaR) [Escherichia coli strain SHP24]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=633266 N6H17_RS16720 WP_001221493.1 3393566..3394225(+) (ciaR) [Escherichia coli strain SHP24]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YXL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365