Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LQ052_RS00040 Genome accession   NZ_CP088203
Coordinates   9359..9871 (+) Length   170 a.a.
NCBI ID   WP_005875808.1    Uniprot ID   A0A4U4EBS1
Organism   Enterococcus durans strain S8-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4359..14871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ052_RS00030 (LQ052_00030) gyrA 6188..8689 (+) 2502 WP_081133664.1 DNA gyrase subunit A -
  LQ052_RS00035 (LQ052_00035) rpsF 9010..9309 (+) 300 WP_005875806.1 30S ribosomal protein S6 -
  LQ052_RS00040 (LQ052_00040) ssb 9359..9871 (+) 513 WP_005875808.1 single-stranded DNA-binding protein Machinery gene
  LQ052_RS00045 (LQ052_00045) rpsR 9897..10133 (+) 237 WP_005875810.1 30S ribosomal protein S18 -
  LQ052_RS00050 (LQ052_00050) - 10382..12355 (+) 1974 WP_081133665.1 DHH family phosphoesterase -
  LQ052_RS00055 (LQ052_00055) rplI 12361..12813 (+) 453 WP_249459819.1 50S ribosomal protein L9 -
  LQ052_RS00060 (LQ052_00060) dnaB 13440..14807 (+) 1368 WP_005875816.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18598.09 Da        Isoelectric Point: 4.6856

>NTDB_id=633266 LQ052_RS00040 WP_005875808.1 9359..9871(+) (ssb) [Enterococcus durans strain S8-3]
MINNVVLVGRLTKDPDLRYTSSGTAVATFTLAVNRNFTSQNGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQLLESRSASENRQQSGGSQSSGQSANNFGGSNNYNQTSQSSNGMPDFDRDNSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=633266 LQ052_RS00040 WP_005875808.1 9359..9871(+) (ssb) [Enterococcus durans strain S8-3]
TTGATTAATAATGTTGTACTAGTTGGACGTCTAACGAAAGATCCAGATTTACGATATACATCAAGTGGCACTGCAGTTGC
AACGTTCACTTTAGCTGTCAATCGTAATTTTACTAGCCAAAACGGCAATCGTGAGGCTGACTTTATCAACTGTGTGATTT
GGCGTAAATCAGCAGAAACATTAGCAAACTATGCTCGCAAAGGTACCCTTTTAGGTGTTACCGGACGTATCCAAACTCGT
TCTTATGATAATCAACAAGGACAACGTGTATATGTAACAGAAGTAGTTGCTGAAAATTTCCAATTATTGGAAAGTCGTTC
TGCATCTGAAAATCGTCAACAAAGCGGCGGTTCTCAAAGTTCTGGTCAATCGGCAAATAATTTTGGCGGAAGTAATAACT
ATAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTTGATCGTGACAATTCTGATCCATTTGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U4EBS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.819

100

0.612
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376