Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   LQK05_RS09920 Genome accession   NZ_CP088157
Coordinates   1993382..1994011 (-) Length   209 a.a.
NCBI ID   WP_000153532.1    Uniprot ID   A0A481NSL0
Organism   Staphylococcus aureus strain 199     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1988382..1999011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQK05_RS09890 (LQK05_09890) - 1988803..1989333 (-) 531 WP_000184383.1 acyl-CoA thioesterase -
  LQK05_RS09895 (LQK05_09895) - 1989423..1990679 (-) 1257 WP_217654526.1 aminopeptidase -
  LQK05_RS09900 (LQK05_09900) - 1990682..1990882 (-) 201 WP_000180460.1 DUF1128 family protein -
  LQK05_RS09905 (LQK05_09905) - 1991029..1991493 (+) 465 WP_000567539.1 low molecular weight protein-tyrosine-phosphatase -
  LQK05_RS09910 (LQK05_09910) - 1991500..1991775 (+) 276 WP_000428172.1 YtxH domain-containing protein -
  LQK05_RS09915 (LQK05_09915) - 1992053..1993270 (+) 1218 WP_000037078.1 YihY/virulence factor BrkB family protein -
  LQK05_RS09920 (LQK05_09920) vraR 1993382..1994011 (-) 630 WP_000153532.1 two-component system response regulator VraR Regulator
  LQK05_RS09925 (LQK05_09925) vraS 1994001..1995044 (-) 1044 WP_001017131.1 sensor histidine kinase Regulator
  LQK05_RS09930 (LQK05_09930) liaF 1995041..1995742 (-) 702 WP_000149064.1 cell wall-active antibiotics response protein LiaF -
  LQK05_RS09935 (LQK05_09935) - 1995757..1996143 (-) 387 WP_001110179.1 hypothetical protein -
  LQK05_RS09940 (LQK05_09940) map 1996360..1997118 (-) 759 WP_000636142.1 type I methionyl aminopeptidase -
  LQK05_RS09945 (LQK05_09945) - 1997534..1998520 (+) 987 WP_000999713.1 aromatic acid exporter family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23516.29 Da        Isoelectric Point: 5.1703

>NTDB_id=632994 LQK05_RS09920 WP_000153532.1 1993382..1994011(-) (vraR) [Staphylococcus aureus strain 199]
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVL
MLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSIGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=632994 LQK05_RS09920 WP_000153532.1 1993382..1994011(-) (vraR) [Staphylococcus aureus strain 199]
ATGACGATTAAAGTATTGTTTGTGGATGATCATGAAATGGTACGTATAGGAATTTCAAGTTATCTATCAACGCAAAGTGA
TATTGAAGTAGTTGGTGAAGGCGCTTCTGGTAAGGAAGCAATTGCCAAAGCCCATGAGTTGAAGCCAGATTTAATTTTAA
TGGATTTACTTATGGAAGACATGGATGGTGTAGAAGCGACGACTCAGATTAAAAAAGATTTACCGCAAATTAAAGTATTA
ATGTTAACTAGTTTTATTGAAGATAAAGAGGTATATCGTGCATTAGATGCAGGTGTCGATAGTTACATTTTAAAAACAAC
AAGTGCAAAAGATATCGCCGATGCAGTTCGTAAAACTTCTATAGGAGAATCTGTTTTTGAACCGGAAGTTTTAGTGAAAA
TGCGTAACCGTATGAAAAAGCGCGCAGAGTTATATGAAATGCTTACAGAACGAGAAATGGAAATATTATTATTGATTGCG
AAAGGTTACTCAAATCAAGAAATTGCTAGTGCATCGCATATTACTATTAAAACGGTTAAGACACATGTGAGTAACATTTT
AAGTAAGTTAGAAGTGCAAGATAGAACACAAGCTGTCATCTATGCATTCCAACATAATTTAATTCAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A481NSL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

99.522

100

0.995
  degU Bacillus subtilis subsp. subtilis str. 168

34.821

100

0.373