Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   N5P16_RS03985 Genome accession   NZ_CP104734
Coordinates   878175..880220 (-) Length   681 a.a.
NCBI ID   WP_004924056.1    Uniprot ID   -
Organism   Acinetobacter baylyi strain JAT2044     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 873175..885220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS03950 (N5P16_03950) - 873689..874360 (+) 672 WP_004924032.1 outer membrane lipid asymmetry maintenance protein MlaD -
  N5P16_RS03955 (N5P16_03955) - 874379..875011 (+) 633 WP_004924035.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  N5P16_RS03960 (N5P16_03960) - 875025..875318 (+) 294 WP_004924038.1 STAS domain-containing protein -
  N5P16_RS03965 (N5P16_03965) - 875370..876383 (-) 1014 WP_004924041.1 magnesium and cobalt transport protein CorA -
  N5P16_RS03970 (N5P16_03970) - 876542..877126 (+) 585 WP_004924043.1 TIGR00730 family Rossman fold protein -
  N5P16_RS03975 (N5P16_03975) - 877145..877543 (+) 399 WP_171056891.1 NUDIX hydrolase -
  N5P16_RS03980 (N5P16_03980) comF 877547..878188 (-) 642 WP_011182736.1 ComF family protein Machinery gene
  N5P16_RS03985 (N5P16_03985) recG 878175..880220 (-) 2046 WP_004924056.1 ATP-dependent DNA helicase RecG Machinery gene
  N5P16_RS03990 (N5P16_03990) - 880244..881059 (+) 816 WP_004924059.1 SDR family oxidoreductase -
  N5P16_RS03995 (N5P16_03995) - 881191..882180 (+) 990 WP_011182733.1 putative solute-binding protein -
  N5P16_RS04000 (N5P16_04000) plsB 882225..884789 (-) 2565 WP_004924064.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 76488.06 Da        Isoelectric Point: 7.9077

>NTDB_id=632634 N5P16_RS03985 WP_004924056.1 878175..880220(-) (recG) [Acinetobacter baylyi strain JAT2044]
MTSVHHLQGVGTAAASLLEKLNIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEGEIKSLDFPAGKRKSVAALLQD
DCGKVTLRFYHIYKGLTDKLKSGQRLRVFGEVRVGARGLEMYHPEIQVIHDYTPLPKTQLTAIYPSTEGLTQPKLREYIK
QALKQYSDNLPELLPKQFTNGYVLKEALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISLLTRRAYIRQIASPK
FEPSQTLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTLVAAIAACHALEAGWQVALMAPTEILA
EQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQAEELIRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLAL
RNKGVDHFTPHQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIASNCLEGKQAYWVCTL
VEQSETLDAQAAEATYQEIRSRFPELKVGLVHGKMKAEEKQNVMQAFKDNQLQLLIATTVIEVGVDVPNASIMVIENAER
LGLSQLHQLRGRVGRGAKASFCVLLYKHPLSQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLE
RDDHLLVQAHYVAEQVLKDHAQQAEALLNRWLPDAPRYAYV

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=632634 N5P16_RS03985 WP_004924056.1 878175..880220(-) (recG) [Acinetobacter baylyi strain JAT2044]
ATGACTTCAGTCCATCATTTGCAAGGCGTTGGAACTGCCGCAGCCAGCTTGCTCGAAAAACTTAATATCTTTACCACAGA
TGATTTGTTGTTTCATTTACCACGCGATTATGAAGATCGTAGCACGGTTATTGCAATGAACCAACTGATGGTTGGGCGAA
GCTATTTGCTTGAAGGTGAAATAAAATCACTCGATTTCCCAGCAGGTAAACGCAAATCTGTAGCGGCCTTACTGCAAGAT
GATTGCGGAAAAGTCACCTTACGCTTTTATCATATTTATAAGGGTTTGACCGATAAACTTAAATCTGGGCAACGGCTACG
GGTGTTTGGTGAGGTTCGTGTTGGTGCACGTGGCTTAGAAATGTATCATCCTGAAATTCAGGTTATTCACGACTATACGC
CACTTCCTAAAACCCAGCTCACGGCCATCTACCCAAGTACCGAAGGTTTAACCCAACCCAAATTACGCGAATATATCAAG
CAAGCGCTCAAACAGTATAGCGATAACCTACCTGAATTACTCCCCAAACAATTTACCAATGGTTATGTCTTAAAAGAAGC
GCTGCACTATATTCATGAGCCACCGCTAAATGCCAATATGCAACAACTGGCTTTAGGTTCACATCCTGCTCAGCAACGTC
TGATTTTTGAGGAACTGGTCGCACATCAGATTAGCTTACTTACTCGACGTGCTTATATTCGTCAGATTGCCTCACCAAAA
TTTGAACCCAGCCAAACTTTAGCAAAAGCATTACTGGCACAGCTTCCTTTTCAGATGACAAGCGCTCAAAAACGTGTTTC
AAAAGAAATTGCGCATGATCTTCATCAATCACAACCTATGCTCAGATTGGTACAAGGCGATGTAGGTGCGGGCAAAACCT
TAGTCGCTGCAATAGCCGCCTGTCATGCGCTGGAAGCTGGCTGGCAAGTCGCATTGATGGCACCTACCGAAATTTTGGCC
GAACAGCATTATCTTAATTTTAAACGCTGGTTTGAACCTTTAAGCATTCAGGTCGGCTGGCTTTCTGGCAAGCAAAAAGG
TAAAGCTCGCACTCAAGCCGAAGAACTGATCCGAACTGGACAAGTCCAACTGGTCATGGGTACGCATGCACTCTTTCAGG
ATAACGTCGAGTTTGCCAAGCTGGGGCTGGTCATTATTGATGAACAGCATCGTTTTGGTGTTGATCAACGCTTGGCTCTT
CGCAATAAAGGCGTAGACCACTTCACCCCACACCAGTTGGTAATGACAGCAACTCCCATCCCACGAACACTTGCAATGAG
TGCCTATGGTGATTTAGATACTTCAGTGATTGATGAATTACCCCCTGGCCGAACGCCAATTCAAACGGTGACGATTCCAC
TAGATCGGCGCGAAGAAGTCATCAATAGAATTGCAAGCAATTGCCTTGAAGGTAAACAAGCTTATTGGGTATGTACTTTG
GTTGAACAGTCCGAAACGCTGGATGCTCAAGCCGCAGAGGCCACCTATCAGGAAATACGCTCACGTTTTCCAGAACTTAA
AGTTGGACTTGTACACGGCAAAATGAAAGCCGAAGAAAAACAGAATGTCATGCAAGCCTTTAAAGACAACCAGCTACAAC
TCTTAATTGCCACAACGGTAATTGAAGTAGGTGTTGATGTACCCAATGCATCAATCATGGTCATTGAAAATGCTGAACGA
TTAGGGCTATCTCAATTACATCAACTGCGGGGTCGGGTGGGTCGTGGTGCCAAAGCCAGCTTTTGTGTGCTGCTGTATAA
GCATCCACTGTCACAAAATGGGCAAGAGCGTCTTTCTATATTAAGAGAAAGTAACGATGGCTTTGTCATTGCCGAAAAAG
ATTTAGAGTTACGTGGCCCAGGTGAATTATTAGGAACCAAGCAAACAGGTGATATGAATTTTCGTGTTGCAAAGTTAGAA
CGTGATGATCATCTATTGGTGCAAGCACATTATGTCGCCGAGCAAGTGTTAAAAGATCATGCTCAACAGGCAGAGGCTTT
ATTAAACCGCTGGCTGCCAGACGCCCCCCGATATGCTTATGTCTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(283-422)

Helicase conserved C-terminal domain (Helicase_C)

(468-576)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(605-663)

RecG wedge domain (RecG_wedge)

(5-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

48.869

97.357

0.476
  recG/mmsA Streptococcus pneumoniae R6

40.238

98.532

0.396
  recG/mmsA Streptococcus pneumoniae R36A

40.238

98.532

0.396
  recG Bacillus subtilis subsp. subtilis str. 168

40.154

95.448

0.383