Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LRM40_RS17025 Genome accession   NZ_CP088081
Coordinates   3658057..3658578 (+) Length   173 a.a.
NCBI ID   WP_151124791.1    Uniprot ID   A0A643FCC1
Organism   Ideonella dechloratans strain CCUG 30977     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3653057..3663578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRM40_RS17005 (LRM40_17005) - 3654835..3655329 (+) 495 WP_151124787.1 cupin domain-containing protein -
  LRM40_RS17010 (LRM40_17010) - 3655308..3655733 (-) 426 WP_151124788.1 hypothetical protein -
  LRM40_RS17015 (LRM40_17015) - 3655825..3656916 (-) 1092 WP_151124789.1 YeiH family protein -
  LRM40_RS17020 (LRM40_17020) - 3657027..3657947 (+) 921 WP_151124790.1 LysR substrate-binding domain-containing protein -
  LRM40_RS17025 (LRM40_17025) ssb 3658057..3658578 (+) 522 WP_151124791.1 single-stranded DNA-binding protein Machinery gene
  LRM40_RS17030 (LRM40_17030) - 3658627..3660183 (+) 1557 WP_151124792.1 sulfotransferase -
  LRM40_RS17035 (LRM40_17035) - 3660194..3660892 (-) 699 WP_151124793.1 fumarylacetoacetate hydrolase family protein -
  LRM40_RS17040 (LRM40_17040) - 3661048..3662451 (-) 1404 WP_151124794.1 sigma-54-dependent Fis family transcriptional regulator -
  LRM40_RS17045 (LRM40_17045) cydP 3662624..3662815 (+) 192 WP_151124795.1 cytochrome oxidase putative small subunit CydP -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18726.82 Da        Isoelectric Point: 5.3877

>NTDB_id=632609 LRM40_RS17025 WP_151124791.1 3658057..3658578(+) (ssb) [Ideonella dechloratans strain CCUG 30977]
MASVNKVIIIGNLGRDPEVRYTPSGAAVCNLRLATTRNWKNRESGERQEETEWHSVVLYDRQAEIAGEYLKKGRPVYIEG
RLKTRKWQDKDGNDRYTTEIVAETMQLLGGRESMGGGDGGGMDEEMGGGSGGGGGYSRPAARPAAPPRAPAPAPRPAPKS
STGFDDMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=632609 LRM40_RS17025 WP_151124791.1 3658057..3658578(+) (ssb) [Ideonella dechloratans strain CCUG 30977]
TTGGCCAGCGTCAACAAAGTCATCATCATCGGCAATCTGGGCCGCGACCCGGAAGTGCGCTACACCCCCAGCGGCGCCGC
CGTCTGCAACCTGCGCCTGGCCACCACCCGCAACTGGAAGAACCGCGAGAGCGGCGAGCGCCAGGAAGAGACCGAATGGC
ACTCGGTGGTGCTGTACGACCGCCAGGCCGAGATCGCCGGCGAGTACCTGAAGAAGGGCCGCCCGGTCTACATCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACGGCAACGACCGCTACACCACCGAGATCGTGGCCGAGACCATGCAGCT
GCTGGGCGGCCGCGAGAGCATGGGCGGCGGCGACGGTGGTGGCATGGACGAGGAGATGGGTGGCGGCAGTGGCGGTGGCG
GCGGCTACAGCCGTCCGGCCGCCCGCCCGGCCGCCCCGCCGCGGGCCCCGGCTCCCGCCCCCCGTCCCGCGCCGAAGTCG
TCCACCGGCTTCGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A643FCC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.111

100

0.532
  ssb Neisseria gonorrhoeae MS11

48.37

100

0.514
  ssb Neisseria meningitidis MC58

48.066

100

0.503
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.503