Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   N5P16_RS00780 Genome accession   NZ_CP104734
Coordinates   170858..171493 (+) Length   211 a.a.
NCBI ID   WP_004920720.1    Uniprot ID   Q6FFD1
Organism   Acinetobacter baylyi strain JAT2044     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 165858..176493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS00760 (N5P16_00760) - 166003..166815 (+) 813 WP_004920707.1 DsbC family protein -
  N5P16_RS00765 (N5P16_00765) - 166991..168292 (+) 1302 WP_004920709.1 homoserine dehydrogenase -
  N5P16_RS00770 (N5P16_00770) thrC 168353..169492 (+) 1140 WP_004920712.1 threonine synthase -
  N5P16_RS00775 (N5P16_00775) pbpG 169586..170644 (-) 1059 WP_004920717.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  N5P16_RS00780 (N5P16_00780) letA 170858..171493 (+) 636 WP_004920720.1 response regulator transcription factor GacA Regulator
  N5P16_RS00785 (N5P16_00785) pilS 171515..173092 (+) 1578 WP_004920722.1 sensor histidine kinase Regulator
  N5P16_RS00790 (N5P16_00790) - 173110..174525 (+) 1416 WP_004920725.1 sigma-54-dependent transcriptional regulator -
  N5P16_RS00795 (N5P16_00795) - 174527..175708 (-) 1182 WP_004920728.1 S41 family peptidase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23167.82 Da        Isoelectric Point: 5.0905

>NTDB_id=632609 N5P16_RS00780 WP_004920720.1 170858..171493(+) (letA) [Acinetobacter baylyi strain JAT2044]
MITVLVVDDHELVRTGICRMLEDQADVDVIGQAESGEEAINIVRQKHPQVVLLDVNMPGIGGVETTRRLLQTAPDTKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDALSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLSIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=632609 N5P16_RS00780 WP_004920720.1 170858..171493(+) (letA) [Acinetobacter baylyi strain JAT2044]
GTGATCACTGTATTAGTCGTTGATGACCATGAATTGGTACGTACGGGTATTTGCCGTATGCTTGAGGATCAAGCCGATGT
TGATGTGATTGGGCAAGCAGAATCTGGAGAAGAAGCCATTAATATTGTGCGTCAGAAGCATCCTCAAGTGGTTTTACTAG
ATGTCAATATGCCTGGTATTGGTGGTGTAGAAACGACACGTCGCTTATTGCAGACAGCTCCAGACACCAAAGTGATTGCG
GTGAGCGGTCTAGCAGAAGAACCCTACCCATCGCTCTTACTGAAAGCAGGTGCCAAAGGTTATATCACCAAAGGTGCCCC
CATTGCTGAAATGGTTCGCGCCATTAATAAAGTGATGCAAGGTGGAAAATACTTTAGTGCTGATATTGCCGAGCAGCTTG
CCAGCTCTTACCTTTCCGACACTCAACAATCTCCATTTGATGCTTTATCAGAACGTGAAATGCAGGTCGCCATGATGGTC
GTTAACTGTATTAGTGCTCAGGAAATTGCAGATAAACTCTTTGTTAGTGTTAAAACAGTGAATACTTACCGCTATCGAAT
TTTTGAAAAACTCAGCATCGATAGCGATGTAAAACTCACCCATCTAGCAATACGTTACGGATTAATCAAACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6FFD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.762

99.526

0.545
  letA Legionella pneumophila strain ERS1305867

54.762

99.526

0.545