Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LRM40_RS17700 Genome accession   NZ_CP088081
Coordinates   3794533..3796053 (-) Length   506 a.a.
NCBI ID   WP_151124824.1    Uniprot ID   -
Organism   Ideonella dechloratans strain CCUG 30977     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3789533..3801053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRM40_RS17675 (LRM40_17675) - 3789546..3791237 (+) 1692 WP_151124829.1 long-chain-fatty-acid--CoA ligase -
  LRM40_RS17680 (LRM40_17680) - 3791292..3791861 (+) 570 WP_151124828.1 hypothetical protein -
  LRM40_RS17685 (LRM40_17685) - 3791901..3792623 (+) 723 WP_151124827.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  LRM40_RS17690 (LRM40_17690) - 3792754..3793182 (+) 429 WP_151124826.1 YidB family protein -
  LRM40_RS17695 (LRM40_17695) - 3793196..3794536 (-) 1341 WP_151124825.1 class I SAM-dependent RNA methyltransferase -
  LRM40_RS17700 (LRM40_17700) rpoN/rpoN1 3794533..3796053 (-) 1521 WP_151124824.1 RNA polymerase factor sigma-54 Machinery gene
  LRM40_RS17705 (LRM40_17705) lptB 3796064..3796828 (-) 765 WP_151124823.1 LPS export ABC transporter ATP-binding protein -
  LRM40_RS17710 (LRM40_17710) lptA 3796825..3797442 (-) 618 WP_170288909.1 lipopolysaccharide transport periplasmic protein LptA -
  LRM40_RS17715 (LRM40_17715) - 3797587..3798231 (-) 645 WP_151124821.1 thiol:disulfide interchange protein DsbA/DsbL -
  LRM40_RS17720 (LRM40_17720) - 3798284..3799006 (-) 723 WP_151124820.1 SPOR domain-containing protein -
  LRM40_RS17725 (LRM40_17725) argS 3799003..3800703 (-) 1701 WP_151124819.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55140.85 Da        Isoelectric Point: 4.5316

>NTDB_id=632610 LRM40_RS17700 WP_151124824.1 3794533..3796053(-) (rpoN/rpoN1) [Ideonella dechloratans strain CCUG 30977]
MKPTLQVRLSQHLALTPQLQQSIRLLQLSTLELHQEVEQMLEQNPFLEPEEERGSFEDQILADRASASSSSATASDEDSG
GSGEGSDEPAGMEASDFGTTERDDWENGTEGDDFDGIRETPGTGSGTGGDDEFEPQDRAGLGPTLQDHLRHQLSGMRLAD
RDAAAVLALIESLDEDGYLDGTLEEIAERIADSLDITDPEAREELLDELRCGLKWLQSLEPAGVGAANLSECLCLQLRQQ
ADTPARACALQIAASHLELLARRDLKKLSAATGSDEATVKAAQALIVACEPKPGRPFARAEQLIVVPDVIVVKSGRNWKA
TLNPDVMPKLRVSDLYAQAIRGQRGGGNLSARLQEARWFIRNIQQRFDTILRVSAAIVERQKNFFTHGEIAMKPLVLREI
ADELGLHESTISRVTTAKYMATPQGTFELKYFFGSSLNTDAGGNASSTAVRALIKQFVAAEDAKKPLSDSQIADMLEEQG
IQVARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=632610 LRM40_RS17700 WP_151124824.1 3794533..3796053(-) (rpoN/rpoN1) [Ideonella dechloratans strain CCUG 30977]
ATGAAGCCGACCCTGCAGGTCCGCCTGTCCCAGCATCTGGCGCTCACGCCGCAGCTGCAGCAGTCCATCCGCCTGCTGCA
GCTCTCCACACTGGAGCTGCACCAGGAAGTCGAGCAGATGCTCGAGCAGAACCCTTTTCTCGAGCCGGAAGAGGAGCGGG
GCAGCTTCGAGGACCAGATCCTGGCCGACCGGGCCAGCGCGAGCAGCAGCAGCGCGACGGCGTCGGACGAAGACAGCGGC
GGCAGTGGTGAAGGTTCGGACGAGCCGGCCGGCATGGAGGCCTCGGACTTCGGCACCACCGAGCGCGACGACTGGGAGAA
CGGCACCGAGGGCGACGACTTCGACGGCATCCGCGAGACGCCCGGTACCGGCAGCGGCACCGGCGGCGACGACGAGTTCG
AACCCCAGGACCGCGCCGGTCTGGGCCCCACGCTGCAGGACCACCTGCGCCATCAGCTCAGCGGCATGCGCCTGGCCGAC
CGCGACGCCGCGGCCGTGCTGGCCCTGATCGAATCGCTGGACGAGGACGGTTACCTCGACGGCACGCTGGAGGAGATCGC
CGAGCGCATCGCCGATTCGCTGGACATCACCGACCCCGAGGCCCGCGAGGAGCTGCTGGACGAGCTGCGCTGCGGCCTGA
AGTGGCTGCAGAGCCTGGAGCCCGCCGGCGTCGGCGCGGCCAACCTGTCCGAATGCCTGTGCCTGCAGCTGCGCCAGCAG
GCCGACACCCCGGCGCGCGCCTGCGCGCTGCAGATCGCGGCATCCCATCTGGAGCTGCTGGCCCGCCGCGACCTGAAGAA
GCTGTCGGCCGCCACCGGCAGCGACGAGGCCACGGTCAAGGCCGCCCAGGCCCTGATCGTCGCCTGCGAGCCCAAGCCCG
GCCGGCCCTTTGCCCGGGCCGAGCAGCTGATCGTCGTGCCCGACGTCATCGTTGTGAAGTCCGGCCGCAACTGGAAGGCC
ACGCTCAACCCGGACGTGATGCCCAAGCTGCGCGTGTCCGACCTCTACGCCCAGGCCATCCGCGGCCAGCGCGGCGGCGG
CAACCTGTCGGCCCGTCTGCAGGAAGCCCGCTGGTTCATCCGCAACATCCAGCAGCGCTTCGACACCATCCTGCGCGTGA
GCGCGGCCATCGTCGAGCGGCAGAAGAACTTCTTCACCCACGGTGAGATCGCCATGAAGCCGCTGGTGCTGCGCGAGATC
GCCGACGAGCTGGGCCTGCACGAATCCACCATCTCCCGCGTCACGACGGCCAAGTACATGGCCACGCCGCAGGGCACCTT
CGAGCTGAAGTACTTCTTCGGCTCCTCGCTCAACACCGATGCCGGCGGCAACGCCTCCAGCACCGCGGTGCGCGCGCTGA
TCAAGCAGTTCGTGGCGGCCGAGGACGCCAAGAAGCCGCTGTCCGACAGCCAGATCGCCGACATGCTCGAAGAGCAGGGC
ATCCAGGTGGCACGCCGCACCGTGGCCAAGTACCGCGAAGCGCTGAAGATCGCGCCCGCCAACCTCCGCAAAGCCCTATG
A

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-336)

Sigma-54, DNA binding domain (Sigma54_DBD)

(350-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

55.854

100

0.575