Detailed information NTG0632250

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: LQF30_RS01440
• Genome accession: NZ_CP088002
• Coordinates: 279132..279641 (+)
• Length: 169 a.a.
• NCBI ID: WP_145356214.1
• Uniprot ID: -
• Organism: Staphylococcus epidermidis strain IVK83
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 274132..284641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQF30_RS01405 (LQF30_01405)	-	274335..274568 (+)	234	WP_145356223.1	MW1434 family type I TA system toxin	-
LQF30_RS01410 (LQF30_01410)	-	274554..274892 (-)	339	WP_002499261.1	hypothetical protein	-
LQF30_RS01415 (LQF30_01415)	-	275042..275218 (+)	177	WP_186297894.1	hypothetical protein	-
LQF30_RS01420 (LQF30_01420)	-	275281..275544 (+)	264	WP_145356221.1	hypothetical protein	-
LQF30_RS01425 (LQF30_01425)	-	275547..277496 (+)	1950	WP_145356219.1	AAA family ATPase	-
LQF30_RS01430 (LQF30_01430)	-	277498..278433 (+)	936	WP_145356217.1	recombinase RecT	-
LQF30_RS01435 (LQF30_01435)	-	278502..279131 (+)	630	WP_263928715.1	MBL fold metallo-hydrolase	-
LQF30_RS01440 (LQF30_01440)	ssbA	279132..279641 (+)	510	WP_145356214.1	single-stranded DNA-binding protein	Machinery gene
LQF30_RS01445 (LQF30_01445)	-	279748..280491 (+)	744	WP_263927715.1	DnaD domain-containing protein	-
LQF30_RS01450 (LQF30_01450)	-	280510..280737 (+)	228	WP_103483030.1	DUF3269 family protein	-
LQF30_RS01455 (LQF30_01455)	-	280747..281154 (+)	408	WP_103483029.1	RusA family crossover junction endodeoxyribonuclease	-
LQF30_RS01460 (LQF30_01460)	-	281195..281701 (+)	507	WP_064600190.1	dUTPase	-
LQF30_RS01465 (LQF30_01465)	-	281667..281822 (+)	156	WP_263927716.1	hypothetical protein	-
LQF30_RS01470 (LQF30_01470)	-	281873..282175 (-)	303	WP_064600193.1	DUF4870 domain-containing protein	-
LQF30_RS01475 (LQF30_01475)	rinB	282280..282456 (+)	177	WP_145356212.1	transcriptional activator RinB	-
LQF30_RS12140	-	282464..282613 (+)	150	WP_002499243.1	DUF1514 domain-containing protein	-
LQF30_RS01480 (LQF30_01480)	-	282630..283076 (+)	447	WP_263927717.1	transcriptional regulator	-
LQF30_RS01485 (LQF30_01485)	-	283661..284011 (+)	351	WP_017464444.1	HNH endonuclease	-
LQF30_RS01490 (LQF30_01490)	-	284154..284624 (+)	471	WP_002497599.1	phage terminase small subunit P27 family	-

Sequence

Protein

• Length: 169 a.a.
• Molecular weight: 18754.34 Da
• Isoelectric Point: 5.2048

>NTDB_id=632250 LQF30_RS01440 WP_145356214.1 279132..279641(+) (ssbA) [Staphylococcus epidermidis strain IVK83]
MINRVVLVGRLTKDPEFRTTQSGIDVATFTLAVNRNFTNAQGEREADFINIIVFRKQAHNVNDYLSKGKLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
NISDDDLPF

Nucleotide

• Length: 510 bp

>NTDB_id=632250 LQF30_RS01440 WP_145356214.1 279132..279641(+) (ssbA) [Staphylococcus epidermidis strain IVK83]
ATGATTAACAGAGTCGTATTAGTAGGTCGTTTAACTAAAGATCCTGAATTTAGAACAACTCAAAGTGGAATTGATGTTGC
AACTTTCACACTAGCAGTTAATCGTAATTTCACAAACGCACAGGGCGAACGTGAAGCAGATTTTATCAATATTATCGTAT
TTAGAAAACAAGCACACAATGTTAACGACTATTTATCGAAAGGAAAATTAGCAGGCGTTGATGGTCGAATTCAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGAATATTTGTGACTGAAGTAGTTGCAGATAGCGTTCAATTTCTTGAACCTAAAAA
CGCACAACAAGGTGGCCAACGTTCACAGAACAATAATTTTCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAACCCGTTTGCAAATGCTAATGGACCGATT
AATATCAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterProScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	59.551	100	0.627
ssb	Latilactobacillus sakei subsp. sakei 23K	53.448	100	0.55
ssbB	Bacillus subtilis subsp. subtilis str. 168	56.25	66.272	0.373