Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LQF30_RS00225 Genome accession   NZ_CP088002
Coordinates   43652..44161 (+) Length   169 a.a.
NCBI ID   WP_001831333.1    Uniprot ID   A0A2G7I1N0
Organism   Staphylococcus epidermidis strain IVK83     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 38652..49161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF30_RS00195 (LQF30_00195) - 39433..40308 (+) 876 WP_001832526.1 mechanosensitive ion channel family protein -
  LQF30_RS00200 (LQF30_00200) - 40329..40532 (+) 204 WP_001831361.1 DUF951 domain-containing protein -
  LQF30_RS00205 (LQF30_00205) ychF 40544..41641 (+) 1098 WP_001831336.1 redox-regulated ATPase YchF -
  LQF30_RS00210 (LQF30_00210) - 41874..42065 (-) 192 WP_001831355.1 hypothetical protein -
  LQF30_RS00215 (LQF30_00215) - 42139..42948 (-) 810 WP_151520889.1 GH25 family lysozyme -
  LQF30_RS00220 (LQF30_00220) rpsF 43333..43629 (+) 297 WP_001831345.1 30S ribosomal protein S6 -
  LQF30_RS00225 (LQF30_00225) ssbA 43652..44161 (+) 510 WP_001831333.1 single-stranded DNA-binding protein Machinery gene
  LQF30_RS00230 (LQF30_00230) rpsR 44201..44443 (+) 243 WP_001831354.1 30S ribosomal protein S18 -
  LQF30_RS00235 (LQF30_00235) - 44627..44799 (-) 173 Protein_46 XRE family transcriptional regulator -
  LQF30_RS00240 (LQF30_00240) - 44913..45173 (-) 261 WP_001830921.1 hypothetical protein -
  LQF30_RS00245 (LQF30_00245) - 45395..45649 (+) 255 WP_001832461.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  LQF30_RS00250 (LQF30_00250) - 45871..45960 (-) 90 Protein_49 hypothetical protein -
  LQF30_RS00255 (LQF30_00255) - 46123..46755 (+) 633 WP_001830914.1 LysE family translocator -
  LQF30_RS00260 (LQF30_00260) - 46776..47366 (+) 591 WP_002468655.1 histidine phosphatase family protein -
  LQF30_RS00265 (LQF30_00265) - 47724..48101 (-) 378 WP_002503288.1 hypothetical protein -
  LQF30_RS00270 (LQF30_00270) - 48321..48944 (-) 624 WP_002497460.1 NDxxF motif lipoprotein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18680.20 Da        Isoelectric Point: 4.9056

>NTDB_id=632247 LQF30_RS00225 WP_001831333.1 43652..44161(+) (ssbA) [Staphylococcus epidermidis strain IVK83]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=632247 LQF30_RS00225 WP_001831333.1 43652..44161(+) (ssbA) [Staphylococcus epidermidis strain IVK83]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
CGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTATAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7I1N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379