Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LOC77_RS17715 Genome accession   NZ_CP087957
Coordinates   3532381..3533070 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain B-001     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3527381..3538070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC77_RS17680 - 3527579..3528061 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LOC77_RS17685 flgM 3528076..3528342 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LOC77_RS17690 - 3528412..3528831 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  LOC77_RS17695 comFC 3528905..3529594 (-) 690 WP_205649078.1 phosphoribosyltransferase family protein Machinery gene
  LOC77_RS17700 - 3529600..3529884 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  LOC77_RS17705 comFA 3529942..3531327 (-) 1386 WP_230639653.1 DEAD/DEAH box helicase Machinery gene
  LOC77_RS17710 - 3531435..3532283 (-) 849 WP_230639654.1 DegV family protein -
  LOC77_RS17715 degU 3532381..3533070 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LOC77_RS17720 degS 3533147..3534310 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  LOC77_RS17725 - 3534533..3535180 (+) 648 WP_043867472.1 YigZ family protein -
  LOC77_RS17730 - 3535185..3536399 (+) 1215 WP_043867473.1 LCP family protein -
  LOC77_RS17735 - 3536489..3537565 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=632066 LOC77_RS17715 WP_003219701.1 3532381..3533070(-) (degU) [Bacillus velezensis strain B-001]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=632066 LOC77_RS17715 WP_003219701.1 3532381..3533070(-) (degU) [Bacillus velezensis strain B-001]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1