Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LOC77_RS17695 Genome accession   NZ_CP087957
Coordinates   3528905..3529594 (-) Length   229 a.a.
NCBI ID   WP_205649078.1    Uniprot ID   -
Organism   Bacillus velezensis strain B-001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3523905..3534594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC77_RS17660 fliW 3523996..3524427 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  LOC77_RS17665 - 3524457..3525026 (-) 570 WP_024085861.1 DUF6470 family protein -
  LOC77_RS17670 flgL 3525117..3526034 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  LOC77_RS17675 flgK 3526046..3527563 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  LOC77_RS17680 - 3527579..3528061 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LOC77_RS17685 flgM 3528076..3528342 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LOC77_RS17690 - 3528412..3528831 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  LOC77_RS17695 comFC 3528905..3529594 (-) 690 WP_205649078.1 phosphoribosyltransferase family protein Machinery gene
  LOC77_RS17700 - 3529600..3529884 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  LOC77_RS17705 comFA 3529942..3531327 (-) 1386 WP_230639653.1 DEAD/DEAH box helicase Machinery gene
  LOC77_RS17710 - 3531435..3532283 (-) 849 WP_230639654.1 DegV family protein -
  LOC77_RS17715 degU 3532381..3533070 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LOC77_RS17720 degS 3533147..3534310 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25287.96 Da        Isoelectric Point: 8.4888

>NTDB_id=632064 LOC77_RS17695 WP_205649078.1 3528905..3529594(-) (comFC) [Bacillus velezensis strain B-001]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTERRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=632064 LOC77_RS17695 WP_205649078.1 3528905..3529594(-) (comFC) [Bacillus velezensis strain B-001]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAGGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603