Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LOC77_RS17705 Genome accession   NZ_CP087957
Coordinates   3529942..3531327 (-) Length   461 a.a.
NCBI ID   WP_230639653.1    Uniprot ID   -
Organism   Bacillus velezensis strain B-001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3524942..3536327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC77_RS17670 flgL 3525117..3526034 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  LOC77_RS17675 flgK 3526046..3527563 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  LOC77_RS17680 - 3527579..3528061 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LOC77_RS17685 flgM 3528076..3528342 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LOC77_RS17690 - 3528412..3528831 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  LOC77_RS17695 comFC 3528905..3529594 (-) 690 WP_205649078.1 phosphoribosyltransferase family protein Machinery gene
  LOC77_RS17700 - 3529600..3529884 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  LOC77_RS17705 comFA 3529942..3531327 (-) 1386 WP_230639653.1 DEAD/DEAH box helicase Machinery gene
  LOC77_RS17710 - 3531435..3532283 (-) 849 WP_230639654.1 DegV family protein -
  LOC77_RS17715 degU 3532381..3533070 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LOC77_RS17720 degS 3533147..3534310 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  LOC77_RS17725 - 3534533..3535180 (+) 648 WP_043867472.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52560.94 Da        Isoelectric Point: 10.1458

>NTDB_id=632065 LOC77_RS17705 WP_230639653.1 3529942..3531327(-) (comFA) [Bacillus velezensis strain B-001]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRTDELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=632065 LOC77_RS17705 WP_230639653.1 3529942..3531327(-) (comFA) [Bacillus velezensis strain B-001]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGACTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGATATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629