Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   LP105_RS01540 Genome accession   NZ_CP087862
Coordinates   277289..278413 (+) Length   374 a.a.
NCBI ID   WP_078274516.1    Uniprot ID   A0A1S9ZZQ6
Organism   Moraxella bovis strain SAM57979     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 272289..283413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP105_RS01515 (LP105_01505) - 273474..274121 (-) 648 WP_112741748.1 UPF0149 family protein -
  LP105_RS01520 (LP105_01510) - 274269..274634 (+) 366 WP_062499973.1 hypothetical protein -
  LP105_RS01525 (LP105_01515) - 274655..275275 (+) 621 WP_264677709.1 cell division protein ZapA -
  LP105_RS01530 (LP105_01520) - 275376..276080 (-) 705 WP_264677710.1 YggS family pyridoxal phosphate-dependent enzyme -
  LP105_RS01535 (LP105_01525) pilT 276233..277279 (+) 1047 WP_029102986.1 type IV pilus twitching motility protein PilT Machinery gene
  LP105_RS01540 (LP105_01530) pilU 277289..278413 (+) 1125 WP_078274516.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LP105_RS01545 (LP105_01535) fur 278464..278910 (-) 447 WP_264677711.1 ferric iron uptake transcriptional regulator -
  LP105_RS01550 (LP105_01540) - 279119..280006 (-) 888 WP_264677712.1 class II glutamine amidotransferase -
  LP105_RS01555 (LP105_01545) - 280008..280694 (-) 687 WP_264695238.1 hypothetical protein -
  LP105_RS01560 (LP105_01550) - 282075..282368 (+) 294 WP_264684562.1 hypothetical protein -
  LP105_RS01565 (LP105_01555) - 282310..282534 (+) 225 WP_264684561.1 hypothetical protein -
  LP105_RS01570 (LP105_01560) - 282809..282964 (+) 156 WP_264676511.1 hypothetical protein -
  LP105_RS01575 (LP105_01565) - 282976..283167 (+) 192 WP_264676510.1 hypothetical protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 41843.19 Da        Isoelectric Point: 6.4355

>NTDB_id=631898 LP105_RS01540 WP_078274516.1 277289..278413(+) (pilU) [Moraxella bovis strain SAM57979]
MDFDKLLQVMIAKNGSDLFITEGVPPSLKVNGTILPMTRTPLTAEQTMALVTSIMTEAQKKEFHETNECQFAISDKAEAA
RFRVSAMIQRNKAAMVLRKIETQIPTTEDLNLPPILKELAMKKRGIILLVGATGTGKSTTLAAMIGHRNENSRGHIITIE
DPIEYVHQHKGCIVTQREVGIDTLSFEEGLKNTLRQAPDVILIGEIRNREVMSYAIQYAETGHLVFATLHANNANQAIDR
IIHFFEADRHGQLFMDLSLNLRAIIAQQLIPTPDGKGRRAAIEILLGTQLIADYIRKGEIHEIKPVMKRSRDIGMQTFDQ
ALFDLYESGQITYQDALKHADSPNDLRLQIKLESKNAVVEEESAKLSIDMGDYN

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=631898 LP105_RS01540 WP_078274516.1 277289..278413(+) (pilU) [Moraxella bovis strain SAM57979]
ATGGATTTTGATAAACTACTACAAGTGATGATTGCCAAAAACGGCTCTGACCTTTTTATCACCGAAGGCGTTCCCCCATC
ACTCAAAGTCAATGGCACCATTTTGCCCATGACCAGAACGCCACTGACCGCCGAGCAGACCATGGCACTGGTAACCAGCA
TCATGACCGAAGCTCAGAAAAAAGAGTTTCATGAGACCAACGAGTGCCAATTTGCCATCTCTGACAAAGCCGAAGCGGCT
CGTTTTCGTGTGTCGGCGATGATTCAGCGTAACAAGGCAGCGATGGTACTGCGTAAGATTGAGACACAAATCCCCACCAC
CGAAGATTTGAACCTACCGCCCATCCTAAAAGAGCTTGCCATGAAAAAGCGTGGCATTATCCTACTTGTGGGTGCGACAG
GTACGGGTAAATCCACCACGCTGGCTGCCATGATTGGCCATCGTAACGAGAACTCTCGTGGTCATATCATTACTATCGAA
GACCCGATTGAATACGTTCATCAGCACAAAGGCTGTATCGTCACTCAGCGTGAGGTGGGTATTGACACGCTCTCGTTTGA
AGAAGGTCTAAAAAACACTCTACGTCAAGCCCCTGATGTCATCCTTATCGGTGAGATTCGTAACCGTGAAGTCATGAGCT
ATGCCATCCAGTACGCTGAGACGGGTCACTTGGTGTTTGCCACGCTCCACGCCAACAACGCCAACCAAGCCATCGACCGT
ATCATTCACTTTTTTGAAGCGGACAGACACGGACAGTTATTCATGGACTTGTCACTCAACTTGCGTGCCATCATCGCCCA
ACAGCTTATCCCAACCCCTGATGGCAAAGGTCGCCGTGCCGCCATTGAGATTTTATTGGGTACACAGCTCATCGCTGACT
ACATTCGCAAGGGCGAGATTCACGAGATTAAACCTGTGATGAAACGCTCTCGTGACATCGGTATGCAGACCTTTGACCAA
GCGTTGTTCGACCTGTATGAATCAGGACAAATCACCTATCAAGACGCACTCAAACACGCTGATAGCCCGAACGACCTACG
TCTACAAATCAAACTCGAAAGCAAAAATGCTGTGGTCGAAGAAGAGTCTGCCAAACTCTCTATTGACATGGGCGATTATA
ATTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(40-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9ZZQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

66.845

100

0.668
  pilU Acinetobacter baylyi ADP1

67.898

94.118

0.639
  pilU Vibrio cholerae strain A1552

52.162

98.93

0.516
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.816

93.048

0.398
  pilT Legionella pneumophila strain Lp02

43.452

89.84

0.39
  pilT Legionella pneumophila strain ERS1305867

43.452

89.84

0.39
  pilT Acinetobacter baumannii D1279779

40.816

91.711

0.374
  pilT Acinetobacter nosocomialis M2

40.816

91.711

0.374
  pilT Acinetobacter baumannii strain A118

40.816

91.711

0.374
  pilT Pseudomonas aeruginosa PAK

40.173

92.513

0.372
  pilT Neisseria meningitidis 8013

40.762

91.176

0.372
  pilT Pseudomonas stutzeri DSM 10701

39.595

92.513

0.366
  pilT Neisseria gonorrhoeae MS11

40

90.909

0.364
  pilT Vibrio cholerae strain A1552

40.597

89.572

0.364
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

40.597

89.572

0.364
  pilT Acinetobacter baylyi ADP1

39.359

91.711

0.361