Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LP088_RS10105 Genome accession   NZ_CP087814
Coordinates   1976567..1977472 (+) Length   301 a.a.
NCBI ID   WP_112742507.1    Uniprot ID   A0AAQ2QAV0
Organism   Moraxella bovis strain SAM109238     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1971567..1982472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP088_RS10095 (LP088_10005) recG 1972904..1974997 (-) 2094 WP_264675927.1 ATP-dependent DNA helicase RecG -
  LP088_RS10100 (LP088_10010) pilC 1975344..1976567 (+) 1224 WP_264675928.1 type II secretion system F family protein Machinery gene
  LP088_RS10105 (LP088_10015) pilD 1976567..1977472 (+) 906 WP_112742507.1 prepilin peptidase Machinery gene
  LP088_RS10115 (LP088_10025) glnD 1977716..1980493 (+) 2778 WP_264675929.1 [protein-PII] uridylyltransferase -
  LP088_RS10120 (LP088_10030) - 1980551..1981399 (+) 849 WP_078273701.1 WG repeat-containing protein -

Sequence

Protein


Download         Length: 301 a.a.        Molecular weight: 32909.20 Da        Isoelectric Point: 8.4715

>NTDB_id=631602 LP088_RS10105 WP_112742507.1 1976567..1977472(+) (pilD) [Moraxella bovis strain SAM109238]
MNCFTFLSDDLWLALALAGLLGLCVGSFLNVVIHRTPLIMNREWRKDTAWFLGTQSDLNPKHVNPIQDVIANDIPISLSF
PPSRCPKCNHQIRAYENIPVLSWLILLRGKCSGCGNPISMRYPSVELITALLSVLVIYTLGANIAGALGLIYLWILITLT
GIDFDTQLLPDRLVFPLGMIGLMANTQNIFTSLGSAVWGGLLGFLSFWSVAKLYALITKKDGMGAGDFKLLGAIGAWLGV
SMLPFLILVSAVLGSIVGVVLMRLRGESRAFAFGPYIAIAGIIALLWGNDIMSWYLNMYKV

Nucleotide


Download         Length: 906 bp        

>NTDB_id=631602 LP088_RS10105 WP_112742507.1 1976567..1977472(+) (pilD) [Moraxella bovis strain SAM109238]
ATGAATTGCTTTACCTTTTTATCAGACGATTTATGGTTGGCACTTGCCCTAGCTGGACTGCTGGGGCTTTGTGTTGGTTC
ATTCTTAAATGTGGTGATTCACCGTACGCCACTTATTATGAATCGTGAATGGCGTAAAGATACGGCATGGTTTTTAGGCA
CTCAATCCGACCTTAACCCCAAGCATGTCAACCCCATTCAAGATGTTATCGCCAATGACATACCCATTAGCCTATCCTTT
CCGCCCTCTCGTTGTCCCAAATGCAACCACCAAATCCGTGCTTATGAAAACATTCCTGTATTAAGCTGGCTCATTCTATT
GCGTGGTAAATGCTCTGGCTGTGGTAATCCCATTAGCATGCGTTATCCATCGGTGGAACTCATTACCGCCTTACTGTCCG
TTTTGGTGATTTATACACTTGGGGCAAATATCGCAGGTGCATTGGGACTTATCTACTTGTGGATACTTATTACTTTAACT
GGCATTGATTTTGATACTCAGCTACTGCCCGACCGTTTGGTGTTTCCGCTAGGCATGATAGGTCTTATGGCAAACACCCA
AAATATCTTTACTTCGCTTGGCTCTGCGGTATGGGGCGGGCTGCTTGGTTTTTTATCCTTTTGGTCGGTTGCCAAACTCT
ATGCACTCATCACCAAAAAAGACGGCATGGGGGCAGGTGATTTTAAACTCTTAGGGGCGATTGGAGCGTGGCTTGGCGTG
AGCATGTTACCCTTTTTGATTCTTGTATCTGCTGTGTTGGGCTCTATCGTGGGCGTGGTGTTGATGAGACTGCGTGGCGA
AAGCCGTGCCTTTGCCTTTGGTCCTTATATCGCCATTGCAGGTATCATCGCCCTATTATGGGGCAACGACATCATGAGTT
GGTATTTAAATATGTACAAAGTGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-139)

Type IV leader peptidase family (Peptidase_A24)

(151-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

50.859

96.678

0.492
  pilD Acinetobacter baumannii D1279779

50.859

96.678

0.492
  pilD Vibrio cholerae strain A1552

45.364

100

0.455
  pilD Vibrio campbellii strain DS40M4

44.291

96.013

0.425
  pilD Neisseria gonorrhoeae MS11

45.221

90.365

0.409