Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LPS07_RS15975 Genome accession   NZ_CP087716
Coordinates   3303379..3303783 (-) Length   134 a.a.
NCBI ID   WP_032057521.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP2044     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3298379..3308783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPS07_RS15945 (LPS07_15945) - 3298463..3298732 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  LPS07_RS15950 (LPS07_15950) rapZ 3298729..3299580 (-) 852 WP_005066272.1 RNase adapter RapZ -
  LPS07_RS15955 (LPS07_15955) panC 3299604..3300452 (-) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  LPS07_RS15960 (LPS07_15960) panB 3300456..3301265 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LPS07_RS15965 (LPS07_15965) folK 3301311..3301793 (-) 483 WP_069120349.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LPS07_RS15970 (LPS07_15970) pcnB 3301790..3303253 (-) 1464 WP_032057519.1 polynucleotide adenylyltransferase PcnB -
  LPS07_RS15975 (LPS07_15975) comEA 3303379..3303783 (-) 405 WP_032057521.1 ComEA family DNA-binding protein Machinery gene
  LPS07_RS15980 (LPS07_15980) mazG 3303752..3304558 (-) 807 WP_032057523.1 nucleoside triphosphate pyrophosphohydrolase -
  LPS07_RS15985 (LPS07_15985) - 3304671..3305444 (+) 774 WP_014208394.1 SDR family oxidoreductase -
  LPS07_RS15990 (LPS07_15990) relA 3305491..3307797 (-) 2307 WP_002117181.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15518.74 Da        Isoelectric Point: 10.5869

>NTDB_id=631217 LPS07_RS15975 WP_032057521.1 3303379..3303783(-) (comEA) [Acinetobacter pittii strain AP2044]
MQLSMNLWKNKHNIFIVLFWSLISSTFIQAQSFDQNFKEWKTKQQRYDQKLSMQHSSHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=631217 LPS07_RS15975 WP_032057521.1 3303379..3303783(-) (comEA) [Acinetobacter pittii strain AP2044]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAACCTT
TATTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGACTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGCATTCCTCTCATTCTAACAGTCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCCGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396