Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   N5877_RS22480 Genome accession   NZ_CP104586
Coordinates   4854538..4855209 (+) Length   223 a.a.
NCBI ID   WP_003120781.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain WTJH6     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4849538..4860209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5877_RS22460 (N5877_22460) - 4849984..4851501 (-) 1518 WP_003116509.1 tripartite tricarboxylate transporter permease -
  N5877_RS22465 (N5877_22465) - 4851512..4851982 (-) 471 WP_003101933.1 tripartite tricarboxylate transporter TctB family protein -
  N5877_RS22470 (N5877_22470) - 4852031..4853014 (-) 984 WP_003085519.1 tripartite tricarboxylate transporter substrate binding protein -
  N5877_RS22475 (N5877_22475) - 4853044..4854327 (-) 1284 WP_003101939.1 OprD family porin -
  N5877_RS22480 (N5877_22480) ciaR 4854538..4855209 (+) 672 WP_003120781.1 response regulator Regulator
  N5877_RS22485 (N5877_22485) - 4855202..4856584 (+) 1383 WP_009875970.1 sensor histidine kinase -
  N5877_RS22490 (N5877_22490) - 4856593..4857429 (-) 837 WP_003085528.1 HDOD domain-containing protein -
  N5877_RS22495 (N5877_22495) - 4857530..4858474 (-) 945 WP_003101947.1 YgfZ/GcvT domain-containing protein -
  N5877_RS22500 (N5877_22500) - 4858747..4859001 (+) 255 WP_003085532.1 succinate dehydrogenase assembly factor 2 -
  N5877_RS22505 (N5877_22505) - 4858985..4859437 (+) 453 WP_003114181.1 protein YgfX -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24416.27 Da        Isoelectric Point: 5.1881

>NTDB_id=631215 N5877_RS22480 WP_003120781.1 4854538..4855209(+) (ciaR) [Pseudomonas aeruginosa strain WTJH6]
MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGFEVLARLRGRGKTLPVLMLTA
RGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEA
MIARPGRVMSKEQLAAQVFGLDEEASADAIEIYVHRLRKKLEGGAVRIVTFRGLGYLLEALGD

Nucleotide


Download         Length: 672 bp        

>NTDB_id=631215 N5877_RS22480 WP_003120781.1 4854538..4855209(+) (ciaR) [Pseudomonas aeruginosa strain WTJH6]
ATGCGCATCCTTCTGGTGGAAGATCATCCGCAGCTCGCCGAAAGCGTGGTCCAGGCGCTCAAGGGCGCCGGCTGGACGGT
AGACCTGCTGCAGGACGGGGTGGCCGCCGACCTGGCTCTGGCCAGCGAGGAGTACGCCCTGGCGATCCTCGACGTCGGCC
TGCCGCGGATGGACGGCTTCGAGGTGCTGGCGCGCCTGCGCGGGCGCGGCAAGACCCTGCCGGTGCTGATGCTGACTGCG
CGCGGCGAGGTGAAGGACCGGGTGCACGGCCTCAATCTCGGCGCCGACGACTACCTGGCAAAGCCTTTCGAACTGTCCGA
GCTGGAGGCGCGGGTCAAGGCCCTGCTGCGCCGCAGCGTGCTCGGTGGCGAACAGTTGCAGCGCTGCGGCGCCCTGGTCT
ACGACCTCGGCACCCGGCGCTTCAGCCTCGACGAGCAGCCGCTGACCCTGACCTCGCGGGAACAGGCGGTGCTGGAAGCG
ATGATCGCCCGTCCGGGGCGGGTGATGAGCAAGGAGCAACTGGCCGCCCAGGTCTTCGGCCTGGACGAGGAGGCCAGCGC
CGACGCCATCGAGATCTACGTCCACCGCCTGCGCAAGAAGCTGGAAGGCGGCGCCGTGCGCATAGTCACCTTCCGCGGCC
TCGGCTACCTGCTGGAGGCGCTGGGTGACTGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-218)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

37.668

100

0.377
  ciaR Streptococcus pneumoniae D39

37.668

100

0.377
  ciaR Streptococcus pneumoniae R6

37.668

100

0.377
  ciaR Streptococcus pneumoniae TIGR4

37.668

100

0.377
  covR Lactococcus lactis subsp. lactis strain DGCC12653

37.668

100

0.377