Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LPS07_RS12735 Genome accession   NZ_CP087716
Coordinates   2627835..2628503 (+) Length   222 a.a.
NCBI ID   WP_230445023.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP2044     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2622835..2633503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPS07_RS12715 (LPS07_12715) - 2625647..2626456 (+) 810 WP_032056744.1 M23 family metallopeptidase -
  LPS07_RS12720 (LPS07_12720) phnO 2626453..2626878 (-) 426 WP_069119562.1 GNAT family N-acetyltransferase -
  LPS07_RS12725 (LPS07_12725) - 2626974..2627396 (-) 423 WP_002121528.1 OsmC family protein -
  LPS07_RS12730 (LPS07_12730) - 2627475..2627594 (-) 120 WP_002121587.1 hypothetical protein -
  LPS07_RS12735 (LPS07_12735) crp 2627835..2628503 (+) 669 WP_230445023.1 cAMP-activated global transcriptional regulator CRP Regulator
  LPS07_RS12740 (LPS07_12740) tas 2628702..2629751 (+) 1050 WP_032056746.1 NADP(H)-dependent aldo-keto reductase -
  LPS07_RS12745 (LPS07_12745) - 2629806..2630585 (-) 780 WP_002121572.1 M48 family metallopeptidase -
  LPS07_RS12750 (LPS07_12750) - 2630701..2631018 (-) 318 WP_002121533.1 hypothetical protein -
  LPS07_RS12755 (LPS07_12755) purA 2631141..2632460 (-) 1320 WP_002121613.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25028.73 Da        Isoelectric Point: 6.4861

>NTDB_id=631213 LPS07_RS12735 WP_230445023.1 2627835..2628503(+) (crp) [Acinetobacter pittii strain AP2044]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=631213 LPS07_RS12735 WP_230445023.1 2627835..2628503(+) (crp) [Acinetobacter pittii strain AP2044]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTGCGTGAAGATGACGAACGTGAAATTGTTGTTGCGTATTTAAATCCGGGCGATTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCCGAAGTTCGAACTCGTGATGTCTGTGAAATTGCAGA
GATCTCTTATGACAACTTCCACGAACTCAGCAAACAATACCCAGACTTAAGCTATGCTGTTTTTGCACAATTAGTTCGCC
GTCTAAAAAATACGACCCGTAAAATGACAGATCTTGCGTTCATTGATGTGTCTGGTCGTATTGCACGTTGCTTAATCGAT
CTATCTTCTCAACCAGAAGCAATGATTTTGCCGAATGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
TGGATGTTCACGTGAGATGGTTGGCCGTGTACTCAAAACCTTAGAAGATCAAGGTATGATCCAAACTGATGGTAAAGCCA
TTCTTATTTTTGATACTTCATTAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

100

1
  crp Vibrio cholerae strain A1552

47.343

93.243

0.441
  crp Haemophilus influenzae Rd KW20

48.705

86.937

0.423