Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   N5877_RS20075 Genome accession   NZ_CP104586
Coordinates   4353318..4353743 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain WTJH6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4348318..4358743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5877_RS20055 (N5877_20055) ileS 4348475..4351306 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  N5877_RS20060 (N5877_20060) lspA 4351299..4351808 (+) 510 WP_003094728.1 signal peptidase II -
  N5877_RS20065 (N5877_20065) fkpB 4351801..4352241 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  N5877_RS20070 (N5877_20070) ispH 4352327..4353271 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N5877_RS20075 (N5877_20075) comF 4353318..4353743 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  N5877_RS20080 (N5877_20080) pilY2 4353740..4354087 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  N5877_RS20085 (N5877_20085) pilY1 4354089..4357580 (-) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  N5877_RS20090 (N5877_20090) pilX 4357592..4358179 (-) 588 WP_015648054.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=631199 N5877_RS20075 WP_003094721.1 4353318..4353743(-) (comF) [Pseudomonas aeruginosa strain WTJH6]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=631199 N5877_RS20075 WP_003094721.1 4353318..4353743(-) (comF) [Pseudomonas aeruginosa strain WTJH6]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383